DRAGEN open-source mapper
☆190Sep 8, 2023Updated 3 years ago
Alternatives and similar repositories for DRAGMAP
Users that are interested in DRAGMAP are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- v2.x of the microassembly based somatic variant caller☆29Updated this week
- Bayesian haplotype-based mutation calling☆327Feb 13, 2026Updated 8 months ago
- The next version of bwa-mem☆868Oct 15, 2025Updated last year
- Plot structural variant signals from many BAMs and CRAMs☆574Jul 13, 2024Updated 2 years ago
- Structural variation and indel detection by local assembly☆258Aug 19, 2026Updated 2 months ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- A structural variation pipeline for short-read sequencing☆210Updated this week
- fast sample-swap and relatedness checks on BAMs/CRAMs/VCFs/GVCFs... "like damn that is one smart wine guy"☆343Updated this week
- Filter of Pairwise Alignement☆45Jan 31, 2022Updated 4 years ago
- Successor of bwa-mem for short-read alignment☆361Oct 30, 2026Updated last week
- Structural Variation and fusion detection using targeted sequencing data from circulating cell free DNA☆28Jun 6, 2024Updated 2 years ago
- A simple toolset for BED files (warning: CLI may change before bedtk becomes stable)☆147Aug 24, 2025Updated last year
- Estimating tumor fraction in cell-free DNA from ultra-low-pass whole genome sequencing.☆222Mar 20, 2024Updated 2 years ago
- Fast and accurate coordinate conversion between assemblies☆117Updated this week
- an API for intersections of genomic data☆150Oct 4, 2026Updated last month
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Annotation and Ranking of Structural Variation☆310Aug 11, 2026Updated 2 months ago
- genetic variant expressions, annotation, and filtering for great good.☆274May 12, 2026Updated 5 months ago
- fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing☆879Oct 29, 2026Updated last week
- TIDDIT - structural variant calling☆80Jul 20, 2026Updated 3 months ago
- The nimble & robust variant annotator☆194Apr 20, 2026Updated 6 months ago
- Population-scale genotyping using pangenome graphs☆203Jan 9, 2025Updated last year
- Jasmine: SV Merging Across Samples☆267Dec 20, 2024Updated last year
- An efficient index for the colored, compacted, de Bruijn graph☆113Jun 19, 2026Updated 4 months ago
- Scalable gVCF merging and joint variant calling for population sequencing projects☆190Apr 12, 2024Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- annotate a VCF with other VCFs/BEDs/tabixed files☆404Jun 16, 2026Updated 4 months ago
- TAPES : a Tool for Assessment and Prioritisation in Exome Studies☆27Jun 22, 2026Updated 4 months ago
- Toolkit for calling structural variants using short or long reads☆120Oct 30, 2026Updated last week
- seqcover allows users to view coverage for hundreds of genes and dozens of samples☆51Apr 9, 2021Updated 5 years ago
- don't get DUP'ed or DEL'ed by your putative SVs.☆109Dec 14, 2020Updated 5 years ago
- Graph realignment tools for structural variants☆172Dec 8, 2022Updated 3 years ago
- Accelerated kernel library for genomics☆113Oct 12, 2026Updated 3 weeks ago
- RTG Tools: Utilities for accurate VCF comparison and manipulation☆339May 27, 2025Updated last year
- overlapping bases in read-pairs from a fragment indicate accuracy and reveal error-prone sites☆34Jun 6, 2025Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Microassembly based somatic variant caller for NGS data☆153Jun 23, 2022Updated 4 years ago
- Automated ACMG/AMP classification for human variants associated with congenital hearing loss☆11May 14, 2025Updated last year
- using all the bits for echt rapid variant annotation and filtering☆166Jul 22, 2026Updated 3 months ago
- A modern compressor for genomic files (FASTQ, SAM/BAM/CRAM, VCF, FASTA, GFF/GTF/GVF, 23andMe...), up to 5x better than gzip and faster to…☆191Oct 19, 2026Updated 2 weeks ago
- ☆291Dec 29, 2025Updated 10 months ago
- Per-base per-nucleotide depth analysis☆153Oct 31, 2026Updated last week
- Accucopy is a computational method that infers Allele-Specific Copy Number alterations from low-coverage low-purity tumor sequencing data…☆16Mar 6, 2024Updated 2 years ago