Illumina / DRAGMAP
DRAGEN open-source mapper
☆167Updated last year
Alternatives and similar repositories for DRAGMAP:
Users that are interested in DRAGMAP are comparing it to the libraries listed below
- Structural variation and indel detection by local assembly☆240Updated 2 months ago
- Jasmine: SV Merging Across Samples☆195Updated last month
- pbsv - PacBio structural variant (SV) calling and analysis tools☆132Updated 3 months ago
- Transcriptome Annotation by Modular Algorithms (for long read RNA sequencing data)☆138Updated last year
- VarDict☆192Updated last year
- Variant calling and somatic mutation/CNV detection for next-generation sequencing data☆155Updated last year
- Clair3 - Symphonizing pileup and full-alignment for high-performance long-read variant calling☆255Updated 3 weeks ago
- A minimap2 frontend for PacBio native data formats☆178Updated last month
- A structural variation pipeline for short-read sequencing☆177Updated this week
- ☆110Updated last month
- A tool for somatic structural variant calling using long reads☆113Updated last week
- ABRA2☆92Updated 2 years ago
- Annotation and Ranking of Structural Variation☆231Updated 2 weeks ago
- GRIDSS: the Genomic Rearrangement IDentification Software Suite☆263Updated last year
- Control-FREEC: Copy number and genotype annotation in whole genome and whole exome sequencing data☆155Updated 5 months ago
- Bayesian genotyper for structural variants☆127Updated 3 years ago
- ☆118Updated 2 months ago
- Pipeline for differential gene expression (DGE) and differential transcript usage (DTU) analysis using long reads☆106Updated last year
- Iso-Seq - Scalable De Novo Isoform Discovery from Single-Molecule PacBio Reads☆200Updated 3 months ago
- VerifyBamID2: A robust tool for DNA contamination estimation from sequence reads using ancestry-agnostic method.☆96Updated 8 months ago
- structural variant calling and genotyping with existing tools, but, smoothly.☆241Updated 7 months ago
- a tool for CNV discovery and genotyping from depth-of-coverage by mapped reads☆213Updated 2 years ago
- SALSA: A tool to scaffold long read assemblies with Hi-C data☆183Updated 8 months ago
- A tool to identify, orient, trim and rescue full length cDNA reads☆81Updated 2 years ago
- Pipeline for calling structural variations in whole genomes sequencing Oxford Nanopore data☆114Updated 3 years ago
- Low Coverage Calling of Genotypes☆146Updated this week
- GenMap - Fast and Exact Computation of Genome Mappability☆104Updated 7 months ago
- Workflows and tutorials for LongRead analysis with specific focus on Oxford Nanopore data☆133Updated 3 years ago
- Tools for processing and analyzing structural variants.☆150Updated 2 years ago
- Workflows for germline short variant discovery with GATK4☆133Updated 3 years ago