Illumina / DRAGMAPLinks
DRAGEN open-source mapper
☆176Updated last year
Alternatives and similar repositories for DRAGMAP
Users that are interested in DRAGMAP are comparing it to the libraries listed below
Sorting:
- A structural variation pipeline for short-read sequencing☆193Updated this week
- ☆133Updated 2 weeks ago
- A tool for somatic structural variant calling using long reads☆144Updated 3 weeks ago
- Structural variation and indel detection by local assembly☆247Updated this week
- Jasmine: SV Merging Across Samples☆224Updated 8 months ago
- pbsv - PacBio structural variant (SV) calling and analysis tools☆158Updated 6 months ago
- Transcriptome Annotation by Modular Algorithms (for long read RNA sequencing data)☆157Updated 2 years ago
- Tools for plotting methylation data in various ways☆160Updated 2 weeks ago
- VarDict☆198Updated last year
- a python extension of CNVnator -- a tool for CNV analysis from depth-of-coverage by mapped reads☆202Updated this week
- Control-FREEC: Copy number and genotype annotation in whole genome and whole exome sequencing data☆167Updated last year
- ☆123Updated last month
- A minimap2 frontend for PacBio native data formats☆202Updated 6 months ago
- PacBio Secondary Analysis Tools on Bioconda. Contains list of PacBio packages available via conda.☆275Updated 6 months ago
- Variant calling and somatic mutation/CNV detection for next-generation sequencing data☆163Updated 2 years ago
- Pipeline for calling structural variations in whole genomes sequencing Oxford Nanopore data☆114Updated 3 years ago
- Bayesian genotyper for structural variants☆134Updated 4 years ago
- Scalable gVCF merging and joint variant calling for population sequencing projects☆166Updated last year
- Iso-Seq - Scalable De Novo Isoform Discovery from Single-Molecule PacBio Reads☆219Updated last month
- ☆102Updated last month
- classify, merge, tracking and annotation of GFF files by comparing to a reference annotation GFF☆239Updated last month
- Repository for the GA4GH Benchmarking Team work developing standardized benchmarking methods for germline small variant calls☆204Updated 4 years ago
- Transcript discovery and quantification with long RNA reads (Nanopores and PacBio)☆176Updated this week
- An ensemble approach to accurately detect somatic mutations using SomaticSeq☆197Updated 3 weeks ago
- Detection of RNA modifications from Oxford Nanopore direct RNA sequencing reads (Liu*, Begik* et al., Nature Comm 2019)☆116Updated last month
- Annotation and Ranking of Structural Variation☆262Updated last week
- Low Coverage Calling of Genotypes☆155Updated 6 months ago
- A complete diploid human genome☆125Updated last week
- GRIDSS: the Genomic Rearrangement IDentification Software Suite☆271Updated 3 months ago
- A tool for estimating repeat sizes☆197Updated last year