shenwei356 / awesomeView external linksLinks
Awesome resources on Bioinformatics, data science, machine learning, programming language (Python, Golang, R, Perl) and miscellaneous stuff.
☆744Dec 11, 2025Updated 2 months ago
Alternatives and similar repositories for awesome
Users that are interested in awesome are comparing it to the libraries listed below
Sorting:
- Practical, reusable scripts for bioinformatics☆102Feb 12, 2019Updated 7 years ago
- A curated list of awesome Bioinformatics libraries and software.☆3,852Mar 21, 2025Updated 10 months ago
- Unix, R and python tools for genomics and data science☆1,364Aug 25, 2025Updated 5 months ago
- A curated list of awesome Bioinformatics databases, softwares, libraries, toolboxes, pipelines, books, courses, tutorials and more.☆45Sep 2, 2021Updated 4 years ago
- A cross-platform and ultrafast toolkit for FASTA/Q file manipulation☆1,509Updated this week
- Useful bash one-liners for bioinformatics.☆1,991Sep 9, 2023Updated 2 years ago
- Visualize whole genome alignments as linear maps☆74Jan 21, 2026Updated 3 weeks ago
- A lightweight and high-performance bioinformatics package in Golang☆95Oct 30, 2025Updated 3 months ago
- Incubator for useful bioinformatics code, primarily in Python and R☆645Feb 5, 2025Updated last year
- A versatile toolkit for k-mers with taxonomic information☆82Aug 28, 2025Updated 5 months ago
- Aggregate results from bioinformatics analyses across many samples into a single report.☆1,419Jan 15, 2026Updated 3 weeks ago
- A cross-platform, efficient and practical CSV/TSV toolkit in Golang☆1,140Jan 26, 2026Updated 2 weeks ago
- Toy files and training material to introduce Linux to molecular biologists☆22Jul 21, 2023Updated 2 years ago
- Python library to facilitate genome assembly, annotation, and comparative genomics☆889Dec 22, 2025Updated last month
- A curated list of resources for learning bioinformatics.☆504Feb 23, 2022Updated 3 years ago
- Fast genome-wide functional annotation through orthology assignment☆700Jun 18, 2025Updated 7 months ago
- python module to plot beautiful and highly customizable genome browser tracks☆864Jul 10, 2024Updated last year
- Openbiox 翻译小组发起并 维护的优秀 Workflow 翻译项目☆27Mar 7, 2020Updated 5 years ago
- Validated, scalable, community developed variant calling, RNA-seq and small RNA analysis☆1,026Aug 24, 2024Updated last year
- A Practical and Efficient NCBI Taxonomy Toolkit, also supports creating NCBI-style taxdump files for custom taxonomies like GTDB/ICTV☆456Jan 5, 2026Updated last month
- Tools to process and analyze deep sequencing data.☆752Jul 23, 2025Updated 6 months ago
- RNAseq analysis notes from Ming Tang☆1,069Nov 15, 2021Updated 4 years ago
- A community-maintained repository of cancer clinical knowledge bases and databases focused on cancer variants.☆321Mar 6, 2025Updated 11 months ago
- An attempt to help anyone interested in using Perl for Bioinformatics☆35Dec 4, 2019Updated 6 years ago
- A list of interesting genome browser and genome visualization programs☆1,047Feb 4, 2026Updated last week
- An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)☆2,283Jan 22, 2026Updated 3 weeks ago
- By study this, it won't be costly or time-consuming to customize a NGS data analysis pipeline☆330Dec 21, 2018Updated 7 years ago
- A list of useful bioinformatics resources☆624Apr 29, 2025Updated 9 months ago
- Personal Cancer Genome Reporter (PCGR)☆274Oct 7, 2025Updated 4 months ago
- Java utilities for Bioinformatics☆516Feb 6, 2026Updated last week
- Guided synteny alignment between duplicated genomes (within specified quota constraint)☆59Sep 5, 2017Updated 8 years ago
- Customizable workflows based on snakemake and python for the analysis of NGS data☆397Jan 23, 2026Updated 3 weeks ago
- Toolkit for processing sequences in FASTA/Q formats☆1,526Jun 1, 2025Updated 8 months ago
- A variable-selection oriented LASSO bagging algorithm for biomarker development in omic-based translational research☆19Jul 7, 2023Updated 2 years ago
- A Nextflow-based pipeline for comprehensive analyses of long non-coding RNAs from RNA-seq datasets☆84Oct 22, 2022Updated 3 years ago
- BWK awk modified for biological data☆636Aug 11, 2022Updated 3 years ago
- annotate a VCF with other VCFs/BEDs/tabixed files☆396Aug 30, 2025Updated 5 months ago
- Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.☆3,648Feb 3, 2026Updated last week
- ChIP-seq analysis notes from Ming Tang☆841Aug 5, 2024Updated last year