shenwei356 / bio_scriptsLinks
Practical, reusable scripts for bioinformatics
☆101Updated 6 years ago
Alternatives and similar repositories for bio_scripts
Users that are interested in bio_scripts are comparing it to the libraries listed below
Sorting:
- ShortStack: Comprehensive annotation and quantification of small RNA genes☆93Updated last month
- Automatically exported from code.google.com/p/ea-utils☆96Updated 2 years ago
- Discovering known and novel miRNAs from small RNA sequencing data☆151Updated 10 months ago
- Bioconductor package "ballgown", devel version. Isoform-level differential expression analysis in R.☆147Updated 3 years ago
- Next-Generation Sequencing(NGS) toolkits.☆46Updated 9 years ago
- Statistical Analysis of Metagenomic Profiles☆93Updated 5 years ago
- PAired-eND Assembler for DNA sequences☆133Updated 4 years ago
- Issue tracker for the Biostar Handbook☆62Updated 3 years ago
- A Nextflow-based pipeline for comprehensive analyses of long non-coding RNAs from RNA-seq datasets☆82Updated 2 years ago
- Biopieces is a bioinformatic framework of tools easily used and easily created.☆142Updated 6 years ago
- New version☆33Updated 8 years ago
- FEELnc : FlExible Extraction of LncRNA☆89Updated 10 months ago
- FunGAP: fungal Genome Annotation Pipeline☆111Updated last month
- Learning the Variant Call Format☆140Updated last year
- PrimerServer2: a high-throughput primer design and specificity-checking platform☆78Updated 2 years ago
- Genomic Interactive Visualization Engine☆145Updated 2 years ago
- Snakemake pipelines for nanopore sequencing data archiving and processing☆91Updated 3 years ago
- Sequana: a set of Snakemake NGS pipelines☆146Updated 4 months ago
- Match up paired end fastq files quickly and efficiently.☆150Updated last year
- Python programs for processing GFF3 files☆98Updated last year
- Annocript is a pipeline for the annotation of de-novo generated transcriptomes. It executes BLAST analysis with UniProt, NCBI Conserved …☆55Updated 5 years ago
- Software for clustering de novo assembled transcripts and counting overlapping reads☆72Updated 3 years ago
- RNA-Seq analysis workflow☆104Updated 4 years ago
- ☆89Updated 4 years ago
- Pipeline for differential gene expression (DGE) and differential transcript usage (DTU) analysis using long reads☆108Updated 2 years ago
- materials for the RNA-Seq workshop on Trinity and Tuxedo, covering de novo and genome-guided transcript assembly and downstream analysis.☆47Updated 8 years ago
- Variant Calling Pipeline Using GATK4 and Nextflow☆56Updated 2 years ago
- Nextflow pipeline for analysis of direct RNA Nanopore reads☆106Updated 3 weeks ago
- In this repo you will find demos and tutorials prepared by members of the CBIB. Feel free to use them for non-commercial activities given…☆82Updated 7 years ago
- Tool for stripping adaptors and/or merging paired reads with overlap into single reads.☆143Updated 8 years ago