Alternatives and similar repositories for rascal

Users that are interested in rascal are comparing it to the libraries listed below

• aeeckhou / shallowHRD
  This method uses shallow Whole Genome Sequencing (sWGS) and the segmentation of a genomic profile to assess the Homologous Recombination …
  ☆34Updated 11 months ago
• mhguo1 / TRAPD
  Burden testing against public controls
  ☆50Updated last year
• gerstung-lab / MutationTimeR
  An R package to time somatic mutations
  ☆62Updated 4 years ago
• ccagc / QDNAseq
  QDNAseq package for Bioconductor
  ☆50Updated 11 months ago
• broadinstitute / RNA_MUTECT_1.0-1
  ☆38Updated 5 years ago
• gavinha / TitanCNA
  Analysis of subclonal copy number alterations (CNA) and loss of heterozygosity (LOH) in cancer
  ☆97Updated 4 years ago
• parklab / ShatterSeek
  ☆69Updated last year
• mskcc / mutation-signatures
  Create mutation signatures from MAF's, and decompose them into Stratton signatures
  ☆60Updated 6 years ago
• hartwigmedical / pipeline5
  ☆21Updated this week
• AlexandrovLab / SigProfilerSingleSample
  SigProfilerSingleSample allows attributing a known set of mutational signatures to an individual sample. The tool identifies the activity…
  ☆23Updated 5 months ago
• markowetzlab / Drews2022_CIN_Compendium
  Main repository for Drews et al. (Nature, 2022)
  ☆42Updated last year
• UMCUGenetics / CHORD
  An R package for predicting HR deficiency from mutation contexts
  ☆28Updated 4 months ago
• gatk-workflows / gatk4-exome-analysis-pipeline
  This WDL pipeline implements data pre-processing and initial variant calling according to the GATK Best Practices for germline SNP and In…
  ☆53Updated 4 years ago
• girirajanlab / CN_Learn
  CN-Learn
  ☆29Updated 5 years ago
• nloyfer / UXM_deconv
  ☆43Updated 2 years ago
• FunGeST / Palimpsest
  An R package for studying mutational signatures and structural variant signatures along clonal evolution in cancer.
  ☆71Updated last year
• Wedge-lab / battenberg
  Battenberg R package for subclonal copynumber estimation
  ☆88Updated 3 weeks ago
• tgac-vumc / ACE
  Absolute Copy Number Estimation using low-coverage whole genome sequencing data
  ☆16Updated 2 years ago
• ChrisMaherLab / ClonEvol
  ☆13Updated 7 years ago
• dariober / cnv_facets
  Somatic copy variant caller (CNV) for next generation sequencing
  ☆72Updated 9 months ago
• ShixiangWang / copynumber
  The "copynumber" R package with support for hg38
  ☆19Updated 2 years ago
• hw538 / cfDNAPro
  cfDNAPro specializes in standardized and robust cfDNA fragmentomic analysis
  ☆33Updated last week
• asntech / QDNAseq.hg38
  QDNAseq bin annotation for hg38
  ☆16Updated 2 months ago
• patidarr / ngs_pipeline
  Exome/Capture/RNASeq Pipeline Implementation using snakemake
  ☆47Updated 7 years ago
• broadinstitute / gistic2
  Genomic Identification of Significant Targets in Cancer (GISTIC), version 2
  ☆51Updated 3 years ago
• nerettilab / RepEnrich2
  RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.
  ☆39Updated 3 years ago
• francois-a / fastqtl
  Enhanced version of the FastQTL QTL mapper
  ☆66Updated 2 years ago
• ENCODE-DCC / long-read-rna-pipeline
  ENCODE long read RNA-seq pipeline
  ☆48Updated 2 years ago
• AlexandrovLab / SigProfilerPlotting
  SigProfilerPlotting provides a standard tool for displaying all types of mutational signatures as well as all types of mutational pattern…
  ☆48Updated 3 months ago
• eyzhao / hrdetect-pipeline
  ☆35Updated 5 years ago