ALLBio / allbiotc2
Benchmark pipeline for Structural Variation analyses, funded by the ALLBio.
☆24Updated 10 years ago
Alternatives and similar repositories for allbiotc2:
Users that are interested in allbiotc2 are comparing it to the libraries listed below
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆56Updated 3 years ago
- Pipeline for structural variant image curation and analysis.☆48Updated 3 years ago
- Python package and routines for merging VCF files☆29Updated 3 years ago
- SVsim: a tool that generates synthetic Structural Variant calls as benchmarks to test/evaluate SV calling pipelines.☆17Updated 7 years ago
- Prioritize structural variants based on CADD scores☆28Updated 4 years ago
- Population-wide Deletion Calling☆35Updated 5 months ago
- PopSTR - A Population based microsatellite genotyper☆32Updated last year
- Exploration of controlled loss of quality values for compressing CRAM files☆34Updated last year
- ☆29Updated 2 years ago
- Pipeline for structural variation detection in cohorts☆49Updated 3 years ago
- heuristics to merge structural variant calls in VCF format.☆36Updated 8 years ago
- Immuological gene typing and annotation for genome assembly☆31Updated 4 months ago
- Remove primer sequence from BAM alignments by soft-clipping☆31Updated 5 years ago
- My experimental tools on top of htslib. NOT OFFICIAL!!!☆54Updated last year
- Adapters for trimming☆30Updated 6 years ago
- FermiKit small variant calls for public SGDP samples☆17Updated 8 years ago
- ☆20Updated this week
- Structural variant (SV) analysis tools☆35Updated 7 months ago
- ☆23Updated 5 years ago
- novoBreak: local assembly for breakpoint detection in cancer genomes☆26Updated 6 years ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆47Updated 5 years ago
- Suite of tools for analysing off-target reads to find CNVs, homozygous regions, and shared haplotypes☆27Updated 7 months ago
- Tools for finding mobile element insertions from single-end datasets☆23Updated 5 years ago
- BreakSeq2: Ultrafast and accurate nucleotide-resolution analysis of structural variants☆24Updated 8 years ago
- Graphite - Graph-based variant adjudication☆28Updated 4 years ago
- Wrapper for RTG's vcfeval; DEPRECATED!☆21Updated 8 years ago
- Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model☆27Updated last year
- R API for browsing, analyzing, and manipulating reference-aligned genome graphs in a GenomicRanges framework☆39Updated 5 months ago
- Python scripts for matching output of Pacific Biosciences IsoSeq RNA-seq pipeline to an annotation file.☆23Updated 9 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆37Updated 5 years ago