ALLBio / allbiotc2Links
Benchmark pipeline for Structural Variation analyses, funded by the ALLBio.
☆24Updated 11 years ago
Alternatives and similar repositories for allbiotc2
Users that are interested in allbiotc2 are comparing it to the libraries listed below
Sorting:
- Python package and routines for merging VCF files☆29Updated 4 years ago
- SVsim: a tool that generates synthetic Structural Variant calls as benchmarks to test/evaluate SV calling pipelines.☆18Updated 8 years ago
- Pipeline for structural variant image curation and analysis.☆49Updated 4 years ago
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆58Updated 3 years ago
- My experimental tools on top of htslib. NOT OFFICIAL!!!☆58Updated 2 months ago
- heuristics to merge structural variant calls in VCF format.☆38Updated 9 years ago
- Structural Variant Prediction Viewer☆35Updated 8 years ago
- Structural variant (SV) analysis tools☆39Updated last year
- Exploration of controlled loss of quality values for compressing CRAM files☆36Updated 2 years ago
- Pipeline for structural variation detection in cohorts☆52Updated 4 years ago
- Prioritize structural variants based on CADD scores☆29Updated 5 years ago
- Population-wide Deletion Calling☆35Updated 7 months ago
- Functions to compare a SV call sets against a truth set.☆30Updated 5 months ago
- A method to identify structural variation from sequencing data in target regions☆32Updated 5 years ago
- Suite of tools for analysing off-target reads to find CNVs, homozygous regions, and shared haplotypes☆31Updated 3 months ago
- Splice junction analysis and filtering from BAM files☆42Updated 3 years ago
- ☆51Updated 6 years ago
- Evaluation of phasing performance☆23Updated 7 years ago
- R API for browsing, analyzing, and manipulating reference-aligned genome graphs in a GenomicRanges framework☆41Updated last month
- Adapters for trimming☆30Updated 6 years ago
- RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…☆67Updated 3 years ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆50Updated 6 years ago
- 10x Genomics Reads Simulator☆46Updated last year
- ☆31Updated 3 years ago
- Tools for finding mobile element insertions from single-end datasets☆24Updated 5 years ago
- PopSTR - A Population based microsatellite genotyper☆33Updated 2 years ago
- Structural variant caller☆55Updated 4 years ago
- Seeking information like heteroplasmy, structure variants, etc. on Mitochondrial genome from next generation sequencing☆41Updated 6 years ago
- novoBreak: local assembly for breakpoint detection in cancer genomes☆25Updated 7 years ago
- Tools for bam file processing☆55Updated 10 years ago