ALLBio / allbiotc2Links
Benchmark pipeline for Structural Variation analyses, funded by the ALLBio.
☆24Updated 11 years ago
Alternatives and similar repositories for allbiotc2
Users that are interested in allbiotc2 are comparing it to the libraries listed below
Sorting:
- Pipeline for structural variant image curation and analysis.☆48Updated 3 years ago
- Python package and routines for merging VCF files☆29Updated 4 years ago
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆57Updated 3 years ago
- SVsim: a tool that generates synthetic Structural Variant calls as benchmarks to test/evaluate SV calling pipelines.☆17Updated 7 years ago
- My experimental tools on top of htslib. NOT OFFICIAL!!!☆56Updated last year
- heuristics to merge structural variant calls in VCF format.☆36Updated 8 years ago
- Pipeline for structural variation detection in cohorts☆49Updated 3 years ago
- Structural Variant Prediction Viewer☆35Updated 8 years ago
- Adapters for trimming☆30Updated 6 years ago
- Structural variant (SV) analysis tools☆36Updated last year
- A method to identify structural variation from sequencing data in target regions☆32Updated 4 years ago
- Functions to compare a SV call sets against a truth set.☆30Updated last month
- adds sample names and read-group (RG) tags to BAM alignments☆51Updated 4 years ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆49Updated 5 years ago
- ☆51Updated 5 years ago
- PopSTR - A Population based microsatellite genotyper☆33Updated last year
- Mapped QC analysis program☆44Updated 7 years ago
- Analysis tool for Nanopore sequencing data☆33Updated 6 years ago
- MetaSV: An accurate and integrative structural-variant caller for next generation sequencing☆56Updated 8 years ago
- Remove primer sequence from BAM alignments by soft-clipping☆31Updated 5 years ago
- Prioritize structural variants based on CADD scores☆29Updated 5 years ago
- Genome-wide reconstruction of complex structural variants☆39Updated 3 years ago
- Suite of tools for analysing off-target reads to find CNVs, homozygous regions, and shared haplotypes☆30Updated last week
- Genotype and phase short tandem repeats using Illumina whole-genome sequencing data☆32Updated 4 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆37Updated 5 years ago
- novoBreak: local assembly for breakpoint detection in cancer genomes☆26Updated 7 years ago
- 10x Genomics Reads Simulator☆45Updated last year
- ☆35Updated 4 years ago
- Population-wide Deletion Calling☆35Updated 3 months ago
- Exploration of controlled loss of quality values for compressing CRAM files☆35Updated 2 years ago