schlegelp / catheat
Plot categorical heatmaps with seaborn
☆18Updated 2 years ago
Alternatives and similar repositories for catheat:
Users that are interested in catheat are comparing it to the libraries listed below
- Platform for integrating genomic analysis with Jupyter Notebooks.☆44Updated 7 months ago
- qtools has helper functions to submit jobs to compute clusters (PBS on TSCC, SGE on oolite) from within Python☆21Updated last year
- requirements, examples, and tests for expression matrix file formats☆22Updated 6 years ago
- WDL plugin for pytest☆48Updated last year
- Toil workflows for common genomic pipelines☆33Updated 5 years ago
- Utilities for analyzing mutations and neoepitopes in patient cohorts☆20Updated 6 years ago
- python (cython) wrapper for https://github.com/ryanlayer/giggle for fast interval searching of huge datasets.☆16Updated 7 years ago
- Biological Graphic tool in Python☆34Updated 4 years ago
- Core pipeline of GenoML☆15Updated 4 years ago
- A client for the Ensembl REST API written in the Python programming language☆26Updated 3 months ago
- provides common tools and lookup tables used primarily by the hgvs and uta packages☆22Updated 2 weeks ago
- Digital Expression Explorer 2 (DEE2): a repository of uniformly processed RNA-seq data☆40Updated 2 months ago
- Epigenetic Variability and Transcription Factor Motifs Analysis Pipeline☆30Updated 7 years ago
- Demonstrating best practices for bioinformatics command line tools☆26Updated 4 years ago
- A Python package for gene network analysis☆32Updated 2 years ago
- BigWig manpulation tools using libBigWig and htslib☆29Updated 7 months ago
- prioritize effects of variant annotations from VEP, SnpEff, et al.☆33Updated 3 months ago
- Chanjo provides a better way to analyze coverage data in clinical sequencing.☆50Updated 3 months ago
- Efficient handling of FASTQ files from Python☆51Updated 6 months ago
- Python module to read binary Plink files.☆16Updated 9 months ago
- ☆13Updated 7 years ago
- python wrapper to dpryan79's bigwig library using cffi☆19Updated 8 years ago
- Simple pure Python SAM parser and objects for working with SAM records☆64Updated 2 years ago
- Monitor computational workflows in real time☆71Updated 10 months ago
- Reads the output from CLI help commands, and generates machine readable schemas (CWL etc)☆14Updated 4 years ago
- Universal RObust Peak Annotator☆15Updated last year
- a minimal, scriptable genome browser for python☆50Updated 3 months ago
- Modular blocks to build Snakemake workflows for reproducible NGS analyses☆22Updated 5 years ago
- Python client for MyVariant.info web services.☆23Updated 2 months ago
- PyIOmica (pyiomica) is a Python package for omics analyses.☆15Updated 2 years ago