Alternatives and similar repositories for catheat

Users that are interested in catheat are comparing it to the libraries listed below

• genepattern / genepattern-notebook
  Platform for integrating genomic analysis with Jupyter Notebooks.
  ☆44Updated 3 months ago
• lgautier / fastq-and-furious
  Efficient handling of FASTQ files from Python
  ☆51Updated 3 months ago
• panoptes-organization / panoptes
  Monitor computational workflows in real time
  ☆73Updated last year
• apierleoni / BioGraPy
  Biological Graphic tool in Python
  ☆34Updated 5 years ago
• goodwright / nextflow.py
  Python wrapper around Nextflow.
  ☆60Updated last week
• brentp / bw-python
  python wrapper to dpryan79's bigwig library using cffi
  ☆19Updated 9 years ago
• EliLillyCo / pytest-wdl
  WDL plugin for pytest
  ☆48Updated 2 years ago
• bionitio-team / bionitio-python
  Demonstrating best practices for bioinformatics command line tools
  ☆26Updated 5 years ago
• brentp / fishers_exact_test
  Fishers Exact Test for Python (Cython)
  ☆66Updated 7 months ago
• brentp / python-giggle
  python (cython) wrapper for https://github.com/ryanlayer/giggle for fast interval searching of huge datasets.
  ☆16Updated 7 years ago
• Snakemake-Profiles / doc
  Documentation of the Snakemake-Profiles project.
  ☆54Updated 3 years ago
• nextflow-io / nf-sqldb
  SQL support plugin for Nextflow
  ☆32Updated last month
• BD2KGenomics / toil-scripts
  Toil workflows for common genomic pipelines
  ☆33Updated 6 years ago
• brentp / geneimpacts
  prioritize effects of variant annotations from VEP, SnpEff, et al.
  ☆34Updated 10 months ago
• brentp / align
  sequence alignment. global, local, glocal.
  ☆42Updated 8 years ago
• manzt / pygv
  a minimal, scriptable genome browser for python
  ☆51Updated 10 months ago
• jbloomlab / alignparse
  Align sequences and then parse features.
  ☆17Updated 2 weeks ago
• lemieuxl / pyplink
  Python module to read binary Plink files.
  ☆17Updated last year
• Zsailer / phylopandas
  Pandas DataFrames for phylogenetics
  ☆74Updated 4 years ago
• kundajelab / genomelake
  Simple and efficient access to genomic data for deep learning models.
  ☆42Updated 5 years ago
• bigdatagenomics / cannoli
  Distributed execution of bioinformatics tools on Apache Spark. Apache 2 licensed.
  ☆41Updated 8 months ago
• mdshw5 / simplesam
  Simple pure Python SAM parser and objects for working with SAM records
  ☆63Updated 3 years ago
• grst / nxfvars
  Access nextflow variables from python scripts or notebooks
  ☆20Updated 4 years ago
• 4dn-dcic / tibanna
  Tibanna helps you run your genomic pipelines on Amazon cloud (AWS). It is used by the 4DN DCIC (4D Nucleome Data Coordination and Integr…
  ☆71Updated 3 weeks ago
• snakemake-workflows / cookiecutter-snakemake-workflow
  A cookiecutter template for Snakemake workflows
  ☆60Updated 3 years ago
• chanzuckerberg / idseq-workflows
  Portable WDL workflows for IDseq production pipelines
  ☆32Updated 3 years ago
• Clinical-Genomics / chanjo
  Chanjo provides a better way to analyze coverage data in clinical sequencing.
  ☆50Updated 10 months ago
• tiagoantao / pygenomics
  A library for next generation genomics in Python 3
  ☆18Updated 7 years ago
• pepkit / peppy
  Project metadata manager for PEPs in Python
  ☆38Updated this week
• alexcoppe / bio-dockers
  Bio-dockers: dockerized bioinformatic tools
  ☆32Updated 3 months ago