schlegelp / catheat
Plot categorical heatmaps with seaborn
☆18Updated 2 years ago
Alternatives and similar repositories for catheat:
Users that are interested in catheat are comparing it to the libraries listed below
- Platform for integrating genomic analysis with Jupyter Notebooks.☆44Updated 8 months ago
- Efficient handling of FASTQ files from Python☆51Updated 7 months ago
- Digital Expression Explorer 2 (DEE2): a repository of uniformly processed RNA-seq data☆40Updated last week
- Demonstrating best practices for bioinformatics command line tools☆26Updated 4 years ago
- A library for next generation genomics in Python 3☆18Updated 6 years ago
- Python module to read binary Plink files.☆17Updated 10 months ago
- a minimal, scriptable genome browser for python☆50Updated 4 months ago
- WDL plugin for pytest☆48Updated last year
- Code to reproduce analyses from the sleuth paper☆16Updated 6 years ago
- Biological Graphic tool in Python☆34Updated 4 years ago
- sequence alignment. global, local, glocal.☆41Updated 8 years ago
- python (cython) wrapper for https://github.com/ryanlayer/giggle for fast interval searching of huge datasets.☆16Updated 7 years ago
- prioritize effects of variant annotations from VEP, SnpEff, et al.☆33Updated 4 months ago
- SMBL - SnakeMake Bioinformatics Library. Automatic installation of bioinformatics software in your SnakeMake pipelines.☆23Updated 7 years ago
- Modular blocks to build Snakemake workflows for reproducible NGS analyses☆22Updated 5 years ago
- Monitor computational workflows in real time☆72Updated 10 months ago
- Fishers Exact Test for Python (Cython)☆65Updated last month
- Toil workflows for common genomic pipelines☆33Updated 5 years ago
- Core pipeline of GenoML☆15Updated 4 years ago
- Align sequences and then parse features.☆18Updated 2 weeks ago
- A python script used to annotate genomic intervals.☆18Updated 4 years ago
- SQL support plugin for Nextflow☆26Updated 2 months ago
- BigWig manpulation tools using libBigWig and htslib☆29Updated 8 months ago
- Chanjo provides a better way to analyze coverage data in clinical sequencing.☆50Updated 4 months ago
- python wrapper to dpryan79's bigwig library using cffi☆19Updated 8 years ago
- Library for indexing VCF files for random access searches by rsID☆17Updated last year
- Reads the output from CLI help commands, and generates machine readable schemas (CWL etc)☆14Updated 4 years ago
- qtools has helper functions to submit jobs to compute clusters (PBS on TSCC, SGE on oolite) from within Python☆21Updated last year
- Access nextflow variables from python scripts or notebooks☆21Updated 4 years ago
- Docker image of JBrowse Genome Browser☆15Updated 4 years ago