ericmjl / Circos
☆15Updated last year
Related projects: ⓘ
- Railroadtracks is a Python package to handle connected computation steps for DNA and RNA Seq.☆14Updated 9 years ago
- GO-PCA: An Unsupervised Method to Explore Gene Expression Data Using Prior Knowledge☆14Updated 7 years ago
- Python client for MyVariant.info web services.☆22Updated 2 years ago
- Epigenetic Variability and Transcription Factor Motifs Analysis Pipeline☆30Updated 6 years ago
- Python module to read binary Plink files.☆16Updated 3 months ago
- Python interface to amino acid properties and IEDB☆49Updated 3 months ago
- Extension of the WGCNA program to improve the eigengene similarity of modules and increase the overall number of genes in modules.☆61Updated 3 years ago
- Modular blocks to build Snakemake workflows for reproducible NGS analyses☆21Updated 5 years ago
- Gene Set Enrichment Analysis (GSEA) is a computational method that determines whether an a priori defined set of genes shows statisticall…☆34Updated 5 months ago
- Gene network analysis☆19Updated last year
- A client for the Ensembl REST API written in the Python programming language☆26Updated 2 years ago
- Quick access to gene synonyms☆24Updated 2 weeks ago
- Tools related to the Genomics of Drug Sensitivity in Cancer (GDSC) projects (http://www.cancerrxgene.org/ )☆34Updated 2 years ago
- Flexible Integration of Data with Deep LEarning☆50Updated last year
- Materials for GCB535 at Penn.☆20Updated 5 years ago
- ImReP is a computational method for rapid and accurate profiling of the adaptive immune repertoire from regular RNA-Seq data.☆28Updated 4 years ago
- Robust, tested workflows for RNA-seq, ChIP-seq and other high-throughput sequencing analysis☆20Updated last week
- 7C: Computational Chromosome Conformation Capture by Correlation of ChIP-seq at CTCF motifs☆12Updated 5 years ago
- Digital Expression Explorer 2 (DEE2): a repository of uniformly processed RNA-seq data☆39Updated last week
- EpiViz is a scientific information visualization tool for genetic and epigenetic data, used to aid in the exploration and understanding o …☆68Updated last year
- A Practical (And Opinionated) Guide To Analyzing 450K Data☆35Updated 9 years ago
- Python wrapper around the popular ChIP-Seq peak caller SICER☆15Updated 6 years ago
- Community-maintained list of resources that the CI4CC organization and the larger cancer informatics community have found useful or are d…☆22Updated 5 years ago
- Python, R and Matlab implementation of Brown's Method to combine dependent P-values☆24Updated 6 years ago
- Plot categorical heatmaps with seaborn☆18Updated 2 years ago
- Platform for integrating genomic analysis with Jupyter Notebooks.☆44Updated last month
- Modeling and correcting fragment sequence bias for RNA-seq☆24Updated 3 months ago
- Concise: Keras extension for regulatory genomics☆32Updated last year
- IPAW: a Nextflow workflow for proteogenomics☆24Updated last month
- An unsupervised transfer learning approach for rare disease transcriptomics☆44Updated 4 years ago