cjfields / bioperl6
reimplementation of BioPerl classes in Raku (e.g. the language formerly known as Perl6)
☆48Updated 6 years ago
Alternatives and similar repositories for bioperl6:
Users that are interested in bioperl6 are comparing it to the libraries listed below
- A Modern Perl Framework for High Throughput Sequencing analysis☆17Updated 4 years ago
- BioPerl wrappers☆36Updated 3 years ago
- The BioPerl Web site: http://bioperl.org☆14Updated 5 years ago
- Git repo for Bio::HTS module on CPAN, providing Perl links into HTSlib☆24Updated last month
- Example code from metagenomics book (https://www.gitbook.com/book/kyclark/metagenomics/details)☆16Updated 6 years ago
- A collection of bioinformatics file format specimens to test against☆47Updated 5 years ago
- The Ensembl Variation Perl API and SQL schema☆27Updated 2 weeks ago
- An approximate sequence pattern matcher for FASTQ/FASTA files.☆30Updated 9 years ago
- Tools for querying and analysis of genomic data☆27Updated 2 months ago
- Viral quasispecies assembly via maximal clique finding. A method to reconstruct viral haplotypes and detect large insertions and deletion…☆25Updated 6 years ago
- find large indels (in the blind spot between GATK/freebayes and SV callers)☆39Updated 7 years ago
- BioPerl scripts and utilities☆11Updated 3 months ago
- Bio::Phylo - Phyloinformatic analysis using Perl☆16Updated 5 years ago
- BioDSL (pronounced Biodiesel) is a Domain Specific Language for creating bioinformatic analysis workflows.☆16Updated 6 years ago
- A Teaching Engine for Genomics☆11Updated 3 years ago
- the Generic Genome Browser☆49Updated last year
- A C++14 library for NGS data formats☆40Updated 5 years ago
- Small general purpose library for C and Python with focus on bioinformatics.☆29Updated 2 years ago
- Bayesian co-estimation of phylogenies and multiple alignments via MCMC☆47Updated this week
- Fast big data XML parser and library, written in Ruby☆17Updated 9 years ago
- An integrated high performance bioinformatics toolkit☆23Updated 5 years ago
- An efficient index for the colored, compacted, de Bruijn graph☆107Updated 4 months ago
- Squeakr: An Exact and Approximate k -mer Counting System☆85Updated last year
- A web wrapper for GeneValidator☆11Updated 4 years ago
- Utility programs to trim or sort Illumina reads with adapter sequences☆15Updated 11 years ago
- Bonsai: Fast, flexible taxonomic analysis and classification☆70Updated 10 months ago
- NBDC/DBCLS BioHackathon 2015☆8Updated 5 years ago
- The 3rd incarnation of the Wise package for sequence analysis☆22Updated 10 years ago
- The Ensembl Compara Perl API and SQL schema☆51Updated this week
- Cosmo is a fast, low-memory DNA assembler using a Succinct (variable order) de Bruijn Graph.☆51Updated 11 months ago