Alternatives and similar repositories for reactome2py

Users that are interested in reactome2py are comparing it to the libraries listed below

• dhimmel / lincs
  Library of Integrated Cellular Signatures L1000
  ☆31Updated 3 years ago
• chembl / tractability_pipeline_v2
  Pipeline for assessing the tractability of potential targets (starting from Gene IDs)
  ☆27Updated 8 months ago
• wikipathways / pywikipathways
  Python Client Package for WikiPathways
  ☆20Updated last month
• sbl-sdsc / mmtf-genomics
  Methods for mapping genomic data onto 3D protein structure.
  ☆28Updated 3 years ago
• opentargets-archive / opentargets-py
  Python client for the Open Targets REST API at targetvalidation.org
  ☆25Updated 2 months ago
• mims-harvard / SPECTRA
  SPECTRA: Spectral framework for evaluation of biomedical AI models
  ☆41Updated 7 months ago
• boscoh / uniprot
  retrieve protein sequence identifiers and metadata from http://uniprot.org
  ☆68Updated 3 years ago
• fjossinet / RNA-Science-Toolbox
  A platform to do RNA science
  ☆27Updated 4 years ago
• SBRG / pymodulon
  Python package for analyzing and visualizing iModulons
  ☆13Updated 2 weeks ago
• PaccMann / paccmann_predictor
  PyTorch implementation of bimodal neural networks for drug-cell (pharmarcogenomics) and drug-protein (proteochemometrics) interaction pre…
  ☆54Updated 2 months ago
• multimeric / Unipressed
  Comprehensive Python client for the Uniprot REST API
  ☆52Updated 3 weeks ago
• cusbg / MolArt
  MOLeculAR structure annoTator
  ☆33Updated last year
• ViennaRNA / RNAsketch
  Python wrapper to design RNA molecules using RNAblueprint, RNARedPrint and for energy evaluations ViennaRNA, Hotknots, pKiss and Nupack.
  ☆21Updated 7 years ago
• dmnfarrell / epitopepredict
  Python package and command line tool for epitope prediction
  ☆52Updated last year
• amirpandi / METIS
  METIS: A versatile active learning workflow for optimization of genetic and metabolic networks
  ☆30Updated 2 years ago
• johli / scrambler
  Interpretation by Deep Generative Masking for Biological Sequences
  ☆37Updated 3 years ago
• PathwayMerger / PathMe
  Harmonizing pathway databases using Biological Expression Language (BEL)
  ☆20Updated last year
• teese / eccpy
  ECCpy is a program for EC50 calculation in python.
  ☆44Updated 2 years ago
• SBRG / Recon3D
  A 3-Dimensional View of Human Metabolism and Disease
  ☆31Updated 7 years ago
• biopragmatics / bioversions
  🪝 What's the latest version for each database?
  ☆27Updated last week
• OATML / EVE
  Official repository for the paper "Large-scale clinical interpretation of genetic variants using evolutionary data and deep learning". Jo…
  ☆65Updated 3 years ago
• CCSB-DFCI / HuRI_paper
  Code for the analyses in the human reference interactome paper.
  ☆28Updated 2 years ago
• oxpig / saab_plus
  ☆26Updated 5 years ago
• r2dt-bio / R2DT
  Visualise RNA secondary structure in consistent, reproducible and recognisable layouts
  ☆75Updated 3 months ago
• sysbio-curie / Neko
  ☆16Updated last month
• johli / seqprop
  Stochastic Sequence Propagation - A Keras Model for optimizing DNA, RNA and protein sequences based on a predictor
  ☆50Updated last year
• jvrana / benchling-api
  A python wrapper for the benchling api
  ☆50Updated 5 years ago
• hgbrian / biocolabs
  a collection of colabs useful for molecular biology
  ☆31Updated last year
• graik / biskit
  A Python platform for Structural Bioinformatics
  ☆57Updated 7 months ago
• TurtleTools / caretta
  A software-suite to perform multiple protein structure alignment and structure feature extraction.
  ☆31Updated 2 years ago