Python library for calling Cytoscape Automation via CyREST
☆89Feb 3, 2026Updated 9 months ago
Alternatives and similar repositories for py4cytoscape
Users that are interested in py4cytoscape are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Python utilities for Cytoscape and Cytoscape.js☆175Feb 21, 2022Updated 4 years ago
- Network visualization webapp.☆14Mar 6, 2023Updated 3 years ago
- Collection of scripts that include programmatic io and control of Cytoscape☆93Jun 30, 2026Updated 4 months ago
- Cytoscape 3 implementation bundles.☆43Oct 8, 2026Updated 3 weeks ago
- Cytoscape org web site.☆22Sep 29, 2026Updated last month
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- cy3sbml: SBML for Cytoscape 3☆16Updated this week
- A Cytoscape Jupyter widget☆291Oct 5, 2026Updated last month
- MOCCASIN translates basic ODE-based MATLAB models of biological processes into SBML format.☆13Aug 21, 2024Updated 2 years ago
- tugHall: a simulator of cancer cell evolution based on the hallmarks of cancer, linked to the mutational states of tumor-related genes. T…☆13Dec 11, 2023Updated 2 years ago
- Ontology for PBPK modelling in life science domain.☆12Updated this week
- Core App: REST API module for Cytoscape☆31Jul 31, 2025Updated last year
- A browser-based implementation of Cytoscape for network visualization and analysis. Runs entirely in your browser with data-driven stylin…☆35Updated this week
- ☆12Aug 30, 2018Updated 8 years ago
- A set of Shiny apps to provide interactive enrichment analysis and exploration of results.☆31Oct 27, 2026Updated last week
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- About Workflow related meetup☆14Dec 4, 2024Updated last year
- A Knowledge Graph from public databases and scientific literature to extract associations between chemicals and diseases.☆17Jul 9, 2024Updated 2 years ago
- Absolute quantification package based on quantms.io☆16Sep 16, 2026Updated last month
- Cytoscape.js wrapper for Streamlit☆34Aug 30, 2022Updated 4 years ago
- Multiple trajectory alignment of time-series data☆10Aug 23, 2023Updated 3 years ago
- Cytoscape.js based network visualizer for Jupyter Notebook☆37Jan 4, 2023Updated 3 years ago
- A tool that helps finding decoy molecules for a given target, provided a set of active molecules.☆19Feb 24, 2022Updated 4 years ago
- CAISC (Clonal Architecture with Integrating SNV and CNV): a software to integrate copy number variation and single nucleotide mutations f…☆14Jul 19, 2021Updated 5 years ago
- Cytoscape interface to STRING and STITCH☆11Updated this week
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- Spending less time on SDRF creates more time for amazing research☆10Oct 15, 2025Updated last year
- Pharmacokinetics database☆53Updated this week
- Jupyter widget for the dynamic and static visualizations of systems biology models written in PySB, BNGL, and SBML☆28Mar 13, 2023Updated 3 years ago
- The BridgeDb Library source code☆37Aug 2, 2026Updated 3 months ago
- Encoding Dynamic Flux Balance Analysis in SBML☆13Sep 16, 2020Updated 6 years ago
- Proteomic Data Analysis with Python (pandas, scikit-learn, numpy, scipy)☆24Jul 6, 2023Updated 3 years ago
- Wrapper R scripts for performing a weighted-gene co-expression network analysis (WGCNA)☆30Jul 26, 2015Updated 11 years ago
- Validation of hOCR close to the specs☆11Jan 8, 2026Updated 9 months ago
- Python library for SBGN☆12Updated this week
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- A Database-based knowledge back-end built on and for INDRA. The INDRA Database is a service that can be set up by any user with their own…☆21Oct 23, 2026Updated 2 weeks ago
- scCIPHER: Contextual deep learning on single-cell-enriched knowledge graphs in neurological disorders☆12Dec 13, 2023Updated 2 years ago
- SODECL is a library of ordinary differential equation (ODE) and stochastic differential equation (SDE) solvers in OpenCL.☆11Jul 4, 2020Updated 6 years ago
- StochKit is an extensible tool for stochastic simulation tool with stochastic and multiscale algorithms.☆17Jun 9, 2020Updated 6 years ago
- A Cytoscape.js extension for the hierarchical clustering algorithm☆10Jul 26, 2017Updated 9 years ago
- ☆34Jun 12, 2019Updated 7 years ago
- pathway and network analysis for metabolomics☆44Dec 8, 2025Updated 10 months ago