Alternatives and similar repositories for py4cytoscape:

Users that are interested in py4cytoscape are comparing it to the libraries listed below

• reactome / reactome2py
  python client for reactome content, analysis, and human functional protein interactions (FI) services api calls.
  ☆28Updated last year
• multimeric / Unipressed
  Comprehensive Python client for the Uniprot REST API
  ☆45Updated 6 months ago
• andrewguy / biostructmap
  A Python package for mapping sequence aligned data onto protein structures
  ☆34Updated 3 years ago
• ProteomicsML / ProteomicsML
  Community-curated tutorials and datasets for ML in proteomics
  ☆49Updated 2 months ago
• bio-tools / biotoolsRegistry
  biotoolsregistry : discovery portal for bioinformatics
  ☆72Updated this week
• krassowski / multi-omics-state-of-the-field
  Analyses for "State of the field in multi-omics research: from computational needs to data mining and sharing"
  ☆26Updated last year
• ViennaRNA / forgi
  An RNA manipulation library.
  ☆54Updated last year
• SysBioChalmers / Human-GEM
  The generic genome-scale metabolic model of Homo sapiens
  ☆106Updated this week
• Metaboverse / Metaboverse
  Visualization and analysis platform for metabolic data and network pattern recognition
  ☆39Updated 2 months ago
• boscoh / uniprot
  retrieve protein sequence identifiers and metadata from http://uniprot.org
  ☆67Updated 3 years ago
• chembl / tractability_pipeline_v2
  Pipeline for assessing the tractability of potential targets (starting from Gene IDs)
  ☆21Updated last week
• cytoscape / cytoscape-automation
  Collection of scripts that include programmatic io and control of Cytoscape
  ☆85Updated this week
• SBRG / Recon3D
  A 3-Dimensional View of Human Metabolism and Disease
  ☆26Updated 6 years ago
• jessegmeyerlab / proteomics-tutorial
  ☆56Updated 9 months ago
• sbmlteam / python-libsbml
  Standalone Python package containing libSBML with support for SBML Level 3 Core and accepted SBML Level 3 packages.
  ☆22Updated 3 months ago
• PathwayAndDataAnalysis / causalpath
  A project for exploring differentially active signaling paths related to proteomics datasets
  ☆40Updated 3 months ago
• levitsky / pyteomics
  Pyteomics is a collection of lightweight and handy tools for Python that help to handle various sorts of proteomics data. Pyteomics provi…
  ☆124Updated 3 weeks ago
• JonnyTran / OpenOmics
  A bioinformatics API to interface with public multi-omics bio databases for wicked fast data integration.
  ☆32Updated 7 months ago
• dhimmel / lincs
  Library of Integrated Cellular Signatures L1000
  ☆30Updated 2 years ago
• SBRG / MASSpy
  ☆22Updated 2 years ago
• saezlab / pypath
  Python module for prior knowledge integration. Builds databases of signaling pathways, enzyme-substrate interactions, complexes, annotat…
  ☆138Updated last week
• OpenMS / pyopenms-docs
  pyOpenMS readthedocs documentation, additional utilities, addons, scripts, and examples.
  ☆46Updated last week
• rcsb / rcsb-saguaro-3d
  ☆28Updated 3 weeks ago
• Edinburgh-Genome-Foundry / DnaCauldron
  Simple cloning simulator (Golden Gate etc.) for single and combinatorial assemblies
  ☆54Updated last year
• protwis / protwis
  Protwis is the backbone of the GPCRdb. The GPCRdb contains reference data, interactive visualisation and experiment design tools for G pr…
  ☆35Updated last month
• benchling / clustalo-python
  A Python wrapper around Clustal Omega (http://www.clustal.org/omega/)
  ☆21Updated 3 years ago
• cusbg / MolArt
  MOLeculAR structure annoTator
  ☆34Updated 4 months ago
• bowang-lab / BIONIC
  Biological Network Integration using Convolutions
  ☆61Updated last year
• usnistgov / lantern
  Interpretable genotype-phenotype landscape modeling
  ☆35Updated last year
• saramasarone / enrich_omics
  A python package to explore pathways, diseases and drugs associated to a list of targets (genes, proteins, etc)
  ☆19Updated 3 months ago