cytoscape / py4cytoscapeLinks
Python library for calling Cytoscape Automation via CyREST
☆85Updated 2 weeks ago
Alternatives and similar repositories for py4cytoscape
Users that are interested in py4cytoscape are comparing it to the libraries listed below
Sorting:
- python client for reactome content, analysis, and human functional protein interactions (FI) services api calls.☆33Updated last year
- biotoolsregistry : discovery portal for bioinformatics☆80Updated last week
- retrieve protein sequence identifiers and metadata from http://uniprot.org☆68Updated 3 years ago
- Simple cloning simulator (Golden Gate etc.) for single and combinatorial assemblies☆62Updated 3 months ago
- The generic genome-scale metabolic model of Homo sapiens☆121Updated 3 months ago
- Create force-directed graphs of RNA secondary structures.☆105Updated 5 years ago
- Python Environment for Modeling and Simulating Biological Systems☆122Updated last month
- A route planner for DNA assembly☆35Updated 3 months ago
- OBO-formatted ontologies → networkx (Python 3)☆146Updated 5 months ago
- Pyteomics is a collection of lightweight and handy tools for Python that help to handle various sorts of proteomics data. Pyteomics provi…☆138Updated last month
- A platform for sharing and reusing biomodeling studies including models, simulations, and visualizations of their results☆41Updated last week
- Comprehensive Python client for the Uniprot REST API☆51Updated 2 months ago
- MOLeculAR structure annoTator☆34Updated 10 months ago
- Standalone Python package containing libSBML with support for SBML Level 3 Core and accepted SBML Level 3 packages.☆23Updated last week
- Python Package for the downstream analysis of mass-spectrometry-based proteomics data☆73Updated this week
- The BiGG Models website server☆83Updated 5 years ago
- Python module for prior knowledge integration. Builds databases of signaling pathways, enzyme-substrate interactions, complexes, annotat…☆148Updated this week
- Project code for BioHackathon Europe 2023.☆18Updated last year
- D3.js based visualizations of cobrapy metabolic models☆47Updated 5 years ago
- 🧪 🖥 Transparent exploration of machine learning for biomarker discovery from proteomics and omics data☆37Updated last year
- Template-based RNA secondary structure visualization☆26Updated 9 months ago
- The MPI Bioinformatics Toolkit☆69Updated last month
- ☆25Updated 2 years ago
- A python wrapper for the benchling api☆50Updated 4 years ago
- 🌶️ An ecosystem in Python for working with the Biological Expression Language (BEL)☆137Updated last year
- Example usage of the Benchling API: https://docs.benchling.com/☆35Updated 2 months ago
- Metabolic Engineering Workbench☆40Updated last year
- Analyses for "State of the field in multi-omics research: from computational needs to data mining and sharing"☆28Updated 2 years ago
- Visualise RNA secondary structure in consistent, reproducible and recognisable layouts☆74Updated last month
- 🎨 Python library to plot multi-part genetic constructs☆25Updated 4 months ago