Alternatives and similar repositories for py4cytoscape

Users that are interested in py4cytoscape are comparing it to the libraries listed below

• reactome / reactome2py
  python client for reactome content, analysis, and human functional protein interactions (FI) services api calls.
  ☆32Updated last year
• LoLab-MSM / pyvipr
  Jupyter widget for the dynamic and static visualizations of systems biology models written in PySB, BNGL, and SBML
  ☆27Updated 2 years ago
• cytoscape / cytoscape-automation
  Collection of scripts that include programmatic io and control of Cytoscape
  ☆87Updated 4 months ago
• bio-tools / biotoolsRegistry
  biotoolsregistry : discovery portal for bioinformatics
  ☆77Updated last week
• cusbg / MolArt
  MOLeculAR structure annoTator
  ☆34Updated 8 months ago
• chembl / tractability_pipeline_v2
  Pipeline for assessing the tractability of potential targets (starting from Gene IDs)
  ☆24Updated 4 months ago
• SBRG / Recon3D
  A 3-Dimensional View of Human Metabolism and Disease
  ☆28Updated 7 years ago
• gyorilab / pybiopax
  PyBioPAX: A python implementation of the BioPAX object model
  ☆24Updated last year
• krassowski / multi-omics-state-of-the-field
  Analyses for "State of the field in multi-omics research: from computational needs to data mining and sharing"
  ☆28Updated last year
• Murali-group / PathLinker
  Connect the dots in networks.
  ☆19Updated 4 years ago
• rcsb / rcsb-saguaro-3d
  ☆29Updated 2 weeks ago
• boscoh / uniprot
  retrieve protein sequence identifiers and metadata from http://uniprot.org
  ☆67Updated 3 years ago
• benchling / integration-examples
  Example usage of the Benchling API: https://docs.benchling.com/
  ☆33Updated 2 weeks ago
• biopragmatics / bioversions
  🪝 What's the latest version for each database?
  ☆27Updated this week
• saezlab / pypath
  Python module for prior knowledge integration. Builds databases of signaling pathways, enzyme-substrate interactions, complexes, annotat…
  ☆143Updated last week
• multimeric / Unipressed
  Comprehensive Python client for the Uniprot REST API
  ☆50Updated last week
• PathwayMerger / PathMe
  Harmonizing pathway databases using Biological Expression Language (BEL)
  ☆19Updated 11 months ago
• elixir-europe / biohackathon-projects-2023
  Project code for BioHackathon Europe 2023.
  ☆18Updated 10 months ago
• SynBioDex / pySBOL3
  Native python implementation of SBOL 3.0 specification
  ☆39Updated 3 months ago
• bowang-lab / BIONIC
  Biological Network Integration using Convolutions
  ☆62Updated last year
• JonnyTran / OpenOmics
  A bioinformatics API to interface with public multi-omics bio databases for wicked fast data integration.
  ☆33Updated 11 months ago
• biothings / mygene.py
  mygene is an easy-to-use Python wrapper to access MyGene.Info services.
  ☆91Updated 5 months ago
• BioSystemsUM / MEWpy
  Metabolic Engineering Workbench
  ☆40Updated last year
• churchmanlab / genewalk
  GeneWalk identifies relevant gene functions for a biological context using network representation learning
  ☆131Updated 10 months ago
• biopragmatics / biomappings
  🗺️ Community curated and predicted equivalences and related mappings between named biological entities that are not available from prima…
  ☆55Updated last week
• ViennaRNA / forgi
  An RNA manipulation library.
  ☆56Updated last year
• lakigigar / bioRxiv-diff
  ☆12Updated 9 months ago
• SBRG / MASSpy
  ☆24Updated 2 years ago
• BioSystemsUM / troppo
  Reconstruction algorithms for Python
  ☆25Updated 8 months ago
• ViennaRNA / RNAblueprint
  RNAblueprint library for uniform sampling of RNA sequences given structural and sequence constraints
  ☆10Updated 10 months ago