Python library for calling Cytoscape Automation via CyREST
☆86Feb 3, 2026Updated 3 months ago
Alternatives and similar repositories for py4cytoscape
Users that are interested in py4cytoscape are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Python utilities for Cytoscape and Cytoscape.js☆176Feb 21, 2022Updated 4 years ago
- Collection of scripts that include programmatic io and control of Cytoscape☆91May 21, 2026Updated last week
- Cytoscape App Store web application code☆18May 19, 2026Updated last week
- A Cytoscape Jupyter widget☆289Apr 6, 2026Updated last month
- A set of Shiny apps to provide interactive enrichment analysis and exploration of results.☆32May 15, 2026Updated 2 weeks ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Cytoscape 3 API bundles.☆27May 2, 2026Updated 3 weeks ago
- Absolute quantification package based on quantms.io☆16Sep 25, 2025Updated 8 months ago
- Cytoscape 3 implementation bundles.☆42May 2, 2026Updated 3 weeks ago
- CAISC (Clonal Architecture with Integrating SNV and CNV): a software to integrate copy number variation and single nucleotide mutations f…☆14Jul 19, 2021Updated 4 years ago
- New version of RCy3, redesigned and collaboratively maintained by Cytoscape developer community☆58Dec 3, 2025Updated 5 months ago
- About Workflow related meetup☆14Dec 4, 2024Updated last year
- MOCCASIN translates basic ODE-based MATLAB models of biological processes into SBML format.☆13Aug 21, 2024Updated last year
- Python library for SBGN☆11May 19, 2026Updated last week
- StochKit is an extensible tool for stochastic simulation tool with stochastic and multiscale algorithms.☆17Jun 9, 2020Updated 5 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- ChemAudit helps researchers validate, standardize, and assess the quality of chemical structures before using them in machine learning mo…☆62May 19, 2026Updated last week
- Ethnicity Annotation from Whole-Exome and Targeted Sequencing Data☆19Mar 18, 2023Updated 3 years ago
- The EnrichmentMap Cytoscape App allows you to visualize the results of gene-set enrichment as a network.☆35Oct 7, 2024Updated last year
- R package for optimized LC-MS spectra processing☆29May 18, 2026Updated last week
- Encoding Dynamic Flux Balance Analysis in SBML☆12Sep 16, 2020Updated 5 years ago
- Cytoscape 3 desktop version.☆17Dec 17, 2025Updated 5 months ago
- Wrapper R scripts for performing a weighted-gene co-expression network analysis (WGCNA)☆30Jul 26, 2015Updated 10 years ago
- ☆34Jun 12, 2019Updated 6 years ago
- metabolomics/lipidomics data processing☆10Feb 17, 2021Updated 5 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- pathway and network analysis for metabolomics☆44Dec 8, 2025Updated 5 months ago
- ☆12Feb 5, 2024Updated 2 years ago
- SODECL is a library of ordinary differential equation (ODE) and stochastic differential equation (SDE) solvers in OpenCL.☆11Jul 4, 2020Updated 5 years ago
- ☆11May 20, 2026Updated last week
- Python package to perform normalization and variance-stabilization of single-cell data☆28Jul 17, 2025Updated 10 months ago
- Pandas API for multiple Gene Set Enrichment Analysis implementations in Python (GSEApy, cudaGSEA, GSEA)☆16Apr 13, 2026Updated last month
- Readme☆10Mar 15, 2020Updated 6 years ago
- SPECTRA: Spectral framework for evaluation of biomedical AI models☆43Mar 7, 2025Updated last year
- A web application to visualize and edit pathway models☆61May 22, 2026Updated last week
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ChemBERTa-3 Repo☆63Jan 9, 2026Updated 4 months ago
- SCDC☆47Jun 20, 2025Updated 11 months ago
- mmCIF Core Access Library☆50May 17, 2026Updated last week
- Companion to "A genome-wide almanac of co-essential modules assigns function to uncharacterized genes" (https://doi.org/10.1101/827071)☆27Jul 19, 2022Updated 3 years ago
- PathIntegrate Python package for pathway-based multi-omics data integration☆19Nov 9, 2024Updated last year
- A Python package for managing simple chemical species and states☆23Jan 20, 2025Updated last year
- Python package to perform enrichment analysis from omics data.☆268May 20, 2026Updated last week