Alternatives and similar repositories for py4cytoscape

Users that are interested in py4cytoscape are comparing it to the libraries listed below

• reactome / reactome2py
  python client for reactome content, analysis, and human functional protein interactions (FI) services api calls.
  ☆34Updated last year
• bio-tools / biotoolsRegistry
  biotoolsregistry : discovery portal for bioinformatics
  ☆81Updated last week
• Edinburgh-Genome-Foundry / DnaWeaver
  A route planner for DNA assembly
  ☆36Updated 5 months ago
• cytoscape / cytoscape-automation
  Collection of scripts that include programmatic io and control of Cytoscape
  ☆88Updated 8 months ago
• boscoh / uniprot
  retrieve protein sequence identifiers and metadata from http://uniprot.org
  ☆68Updated 3 years ago
• mfitzp / padua
  Proteomic Data Analysis with Python (pandas, scikit-learn, numpy, scipy)
  ☆24Updated 2 years ago
• SBRG / MASSpy
  ☆25Updated 2 years ago
• multimeric / Unipressed
  Comprehensive Python client for the Uniprot REST API
  ☆52Updated 3 weeks ago
• LoLab-MSM / pyvipr
  Jupyter widget for the dynamic and static visualizations of systems biology models written in PySB, BNGL, and SBML
  ☆27Updated 2 years ago
• krassowski / multi-omics-state-of-the-field
  Analyses for "State of the field in multi-omics research: from computational needs to data mining and sharing"
  ☆28Updated 2 years ago
• saezlab / pypath
  Python module for prior knowledge integration. Builds databases of signaling pathways, enzyme-substrate interactions, complexes, annotat…
  ☆152Updated this week
• jessegmeyerlab / proteomics-tutorial
  ☆66Updated last year
• chembl / tractability_pipeline_v2
  Pipeline for assessing the tractability of potential targets (starting from Gene IDs)
  ☆27Updated 8 months ago
• biosustain / cameo
  cameo - computer aided metabolic engineering & optimization
  ☆120Updated 2 years ago
• SysBioChalmers / Human-GEM
  The generic genome-scale metabolic model of Homo sapiens
  ☆122Updated last month
• HUPO-PSI / mzQC
  Reporting and exchange format for mass spectrometry quality control data
  ☆31Updated 2 weeks ago
• biopragmatics / bioregistry
  📮 An integrative registry of biological databases, ontologies, and nomenclatures.
  ☆136Updated this week
• proteinevolution / Toolkit
  The MPI Bioinformatics Toolkit
  ☆69Updated 3 months ago
• MannLabs / alphapeptstats
  Python Package for the downstream analysis of mass-spectrometry-based proteomics data
  ☆74Updated last month
• sbmlteam / python-libsbml
  Standalone Python package containing libSBML with support for SBML Level 3 Core and accepted SBML Level 3 packages.
  ☆23Updated 2 weeks ago
• churchmanlab / genewalk
  GeneWalk identifies relevant gene functions for a biological context using network representation learning
  ☆132Updated last year
• bigbio / pmultiqc
  A library for QC report based on MultiQC framework
  ☆22Updated last week
• benchling / integration-examples
  Example usage of the Benchling API: https://docs.benchling.com/
  ☆35Updated 4 months ago
• BioSystemsUM / MEWpy
  Metabolic Engineering Workbench
  ☆40Updated last year
• jvrana / benchling-api
  A python wrapper for the benchling api
  ☆50Updated 5 years ago
• dhimmel / obonet
  OBO-formatted ontologies → networkx (Python 3)
  ☆147Updated 7 months ago
• pybel / pybel
  🌶️ An ecosystem in Python for working with the Biological Expression Language (BEL)
  ☆137Updated last year
• cusbg / MolArt
  MOLeculAR structure annoTator
  ☆33Updated last year
• wfondrie / ppx
  A Python interface to proteomics data repositories
  ☆35Updated 4 months ago
• SBRG / Recon3D
  A 3-Dimensional View of Human Metabolism and Disease
  ☆31Updated 7 years ago