Data2Dynamics / d2dLinks
a modeling environment tailored to parameter estimation in dynamical systems
☆61Updated last month
Alternatives and similar repositories for d2d
Users that are interested in d2d are comparing it to the libraries listed below
Sorting:
- High-performance sensitivity analysis for large ordinary differential equation models☆125Updated this week
- PEtab - an SBML and TSV based data format for parameter estimation problems in systems biology☆60Updated 3 weeks ago
- Parameter estimation for dynamical models using high-performance computing, batch and mini-batch optimizers, and dynamic load balancing.☆23Updated 7 months ago
- PESTO: Parameter EStimation TOolbox, Bioinformatics, btx676, 2017.☆26Updated 5 years ago
- StochPy is a versatile stochastic modeling package which is designed for stochastic simulation of molecular control networks☆42Updated 3 months ago
- Python utilities for SBML☆41Updated 2 weeks ago
- libRoadRunner: A high-performance SBML simulator☆51Updated 2 months ago
- MOCCASIN translates basic ODE-based MATLAB models of biological processes into SBML format.☆12Updated last year
- emgr -- EMpirical GRamian Framework☆19Updated last year
- Jupyter widget for the dynamic and static visualizations of systems biology models written in PySB, BNGL, and SBML☆27Updated 2 years ago
- python Parameter EStimation TOolbox☆261Updated last week
- A collection of mathematical models with experimental data in the PEtab format as benchmark problems in order to evaluate new and existin…☆29Updated last week
- optlang - sympy based mathematical programming language☆263Updated 8 months ago
- Encoding Dynamic Flux Balance Analysis in SBML☆12Updated 5 years ago
- Standalone Python package containing libSBML with support for SBML Level 3 Core and accepted SBML Level 3 packages.☆23Updated last month
- Python wrapper around cvodes (from the sundials library)☆35Updated last week
- Models that demonstrate the syntax and functionality of BioNetGen language and simulation tools.☆15Updated 2 years ago
- A Python toolbox for COPASI☆13Updated last year
- PyDSTool main development repo☆176Updated 2 years ago
- Spatial computation☆21Updated 3 years ago
- a collection of modern sparse (regularized) linear regression algorithms.☆64Updated 5 years ago
- CompuCell3D public source code repository☆72Updated 2 weeks ago
- HAL (Hybrid Automata Library) is the one-stop shop for all of your hybrid modeling needs☆36Updated last year
- Solve symbolically defined systems of non-linear equations numerically.☆52Updated 3 weeks ago
- Python framework for Systems Biology modeling☆185Updated 2 months ago
- Boolean Network Modeling☆40Updated 5 years ago
- Trust Region Optimization in Python☆28Updated 2 years ago
- Documentation, models and code relating to the 3rd edition of the textbook Stochastic Modelling for Systems Biology☆32Updated 7 months ago
- ☆18Updated this week
- GPU-accelerated multicellular modelling framework☆66Updated 5 months ago