Alternatives and similar repositories for d2d

Users that are interested in d2d are comparing it to the libraries listed below

• ICB-DCM / parPE
  Parameter estimation for dynamical models using high-performance computing, batch and mini-batch optimizers, and dynamic load balancing.
  ☆22Updated 5 months ago
• ICB-DCM / PESTO
  PESTO: Parameter EStimation TOolbox, Bioinformatics, btx676, 2017.
  ☆26Updated 5 years ago
• sbmlteam / moccasin
  MOCCASIN translates basic ODE-based MATLAB models of biological processes into SBML format.
  ☆12Updated 11 months ago
• AMICI-dev / AMICI
  High-performance sensitivity analysis for large ordinary differential equation models
  ☆124Updated last week
• PEtab-dev / PEtab
  PEtab - an SBML and TSV based data format for parameter estimation problems in systems biology
  ☆60Updated last week
• SystemsBioinformatics / stochpy
  StochPy is a versatile stochastic modeling package which is designed for stochastic simulation of molecular control networks
  ☆41Updated last month
• LoLab-MSM / pyvipr
  Jupyter widget for the dynamic and static visualizations of systems biology models written in PySB, BNGL, and SBML
  ☆27Updated 2 years ago
• sys-bio / tellurium
  Python Environment for Modeling and Simulating Biological Systems
  ☆123Updated 3 weeks ago
• matthiaskoenig / dfba
  Encoding Dynamic Flux Balance Analysis in SBML
  ☆12Updated 4 years ago
• matthiaskoenig / sbmlutils
  Python utilities for SBML
  ☆41Updated 2 months ago
• RuleWorld / BNGTutorial
  Models that demonstrate the syntax and functionality of BioNetGen language and simulation tools.
  ☆15Updated 2 years ago
• RuleWorld / bionetgen
  Rule-based modeling framework
  ☆64Updated 2 months ago
• CiaranWelsh / pycotools3
  A Python toolbox for COPASI
  ☆13Updated last year
• sys-bio / roadrunner
  libRoadRunner: A high-performance SBML simulator
  ☆51Updated 3 weeks ago
• gramian / emgr
  emgr -- EMpirical GRamian Framework
  ☆19Updated last year
• robclewley / pydstool
  PyDSTool main development repo
  ☆175Updated 2 years ago
• ICB-DCM / pyPESTO
  python Parameter EStimation TOolbox
  ☆250Updated last week
• sys-bio / antimony
  ☆18Updated 3 weeks ago
• sbmlteam / sbml-test-suite
  The SBML Test Suite is a conformance testing system. It allows developers and users to test the degree and correctness of the SBML suppor…
  ☆26Updated 3 weeks ago
• sbmlteam / python-libsbml
  Standalone Python package containing libSBML with support for SBML Level 3 Core and accepted SBML Level 3 packages.
  ☆23Updated 3 months ago
• Ohjeah / sparsereg
  a collection of modern sparse (regularized) linear regression algorithms.
  ☆64Updated 5 years ago
• mathworks / matlab-codecov-example
  Use MATLAB with Codecov
  ☆11Updated last year
• DrosteEffect / CubeHelix
  [MATLAB] The only colormap generator you will ever need! Beautiful, distinctive colormaps that desaturate to grayscale but keep the seque…
  ☆25Updated 3 weeks ago
• Benchmarking-Initiative / Benchmark-Models-PEtab
  A collection of mathematical models with experimental data in the PEtab format as benchmark problems in order to evaluate new and existin…
  ☆29Updated 2 weeks ago
• opencobra / driven
  Data-Driven Constraint-based analysis
  ☆12Updated 2 years ago
• pysb / pysb
  Python framework for Systems Biology modeling
  ☆183Updated 2 weeks ago
• bjodah / pyneqsys
  Solve symbolically defined systems of non-linear equations numerically.
  ☆52Updated last month
• ialbert / booleannet
  Boolean Network Modeling
  ☆40Updated 5 years ago
• opencobra / optlang
  optlang - sympy based mathematical programming language
  ☆261Updated 7 months ago
• sciapp / python-gr
  Python wrapper for the GR framework
  ☆30Updated this week