Data2Dynamics / d2dLinks
a modeling environment tailored to parameter estimation in dynamical systems
☆63Updated 5 months ago
Alternatives and similar repositories for d2d
Users that are interested in d2d are comparing it to the libraries listed below
Sorting:
- PEtab - an SBML and TSV based data format for parameter estimation problems in systems biology☆61Updated 3 weeks ago
- Parameter estimation for dynamical models using high-performance computing, batch and mini-batch optimizers, and dynamic load balancing.☆22Updated 3 weeks ago
- High-performance sensitivity analysis for large ordinary differential equation models☆129Updated 2 weeks ago
- PESTO: Parameter EStimation TOolbox, Bioinformatics, btx676, 2017.☆26Updated 5 years ago
- StochPy is a versatile stochastic modeling package which is designed for stochastic simulation of molecular control networks☆42Updated 6 months ago
- MOCCASIN translates basic ODE-based MATLAB models of biological processes into SBML format.☆12Updated last year
- Modeling toolkit for biochemical simulation☆81Updated 11 months ago
- Jupyter widget for the dynamic and static visualizations of systems biology models written in PySB, BNGL, and SBML☆27Updated 2 years ago
- Python utilities for SBML☆41Updated last month
- Python Environment for Modeling and Simulating Biological Systems☆130Updated last month
- Rule-based modeling framework☆65Updated 7 months ago
- PyDSTool main development repo☆176Updated 2 years ago
- Encoding Dynamic Flux Balance Analysis in SBML☆12Updated 5 years ago
- libRoadRunner: A high-performance SBML simulator☆55Updated 2 weeks ago
- GPU-accelerated multicellular modelling framework☆68Updated 8 months ago
- Models that demonstrate the syntax and functionality of BioNetGen language and simulation tools.☆15Updated 2 years ago
- python Parameter EStimation TOolbox☆265Updated 2 weeks ago
- Simulation platform of animal embryogenesis☆20Updated 3 years ago
- Solve symbolically defined systems of non-linear equations numerically.☆52Updated 4 months ago
- COPASI is a software application for simulation and analysis of biochemical networks and their dynamics.☆121Updated 2 weeks ago
- emgr -- EMpirical GRamian Framework☆20Updated 2 years ago
- optlang - sympy based mathematical programming language☆266Updated 11 months ago
- Python wrapper around cvodes (from the sundials library)☆35Updated 3 months ago
- a collection of modern sparse (regularized) linear regression algorithms.☆65Updated 5 years ago
- PyBoolNet is a Python package for the generation, modification and analysis of Boolean networks.☆51Updated last year
- Standalone Python package containing libSBML with support for SBML Level 3 Core and accepted SBML Level 3 packages.☆23Updated 2 months ago
- A collection of mathematical models with experimental data in the PEtab format as benchmark problems in order to evaluate new and existin…☆29Updated last month
- Data-Driven Constraint-based analysis☆12Updated 3 years ago
- Boolean Network Modeling☆40Updated 5 years ago
- Python framework for Systems Biology modeling☆190Updated 5 months ago