Data2Dynamics / d2d
a modeling environment tailored to parameter estimation in dynamical systems
☆59Updated this week
Alternatives and similar repositories for d2d:
Users that are interested in d2d are comparing it to the libraries listed below
- Parameter estimation for dynamical models using high-performance computing, batch and mini-batch optimizers, and dynamic load balancing.☆21Updated last month
- PEtab - an SBML and TSV based data format for parameter estimation problems in systems biology☆61Updated this week
- MOCCASIN translates basic ODE-based MATLAB models of biological processes into SBML format.☆12Updated 7 months ago
- A collection of mathematical models with experimental data in the PEtab format as benchmark problems in order to evaluate new and existin…☆29Updated last month
- PESTO: Parameter EStimation TOolbox, Bioinformatics, btx676, 2017.☆26Updated 5 years ago
- Encoding Dynamic Flux Balance Analysis in SBML☆11Updated 4 years ago
- A Python toolbox for COPASI☆13Updated 9 months ago
- Advanced Multilanguage Interface to CVODES and IDAS☆114Updated this week
- Standalone Python package containing libSBML with support for SBML Level 3 Core and accepted SBML Level 3 packages.☆22Updated 4 months ago
- Jupyter widget for the dynamic and static visualizations of systems biology models written in PySB, BNGL, and SBML☆27Updated 2 years ago
- a C library for symbolic and numerical analysis of a system of ordinary differential equations (ODEs) derived from a chemical reaction ne…☆22Updated 7 years ago
- The SBML Test Suite is a conformance testing system. It allows developers and users to test the degree and correctness of the SBML suppor…☆24Updated last year
- Python package for working with PEtab files☆14Updated this week
- Python utilities for SBML☆40Updated last month
- cy3sbml: SBML for Cytoscape 3☆14Updated last week
- ☆18Updated this week
- libRoadRunner: A high-performance SBML simulator☆46Updated 2 weeks ago
- A simplified python interface to COPASI.☆20Updated last month
- Ontology of algorithms for analyzing biological models, their parameters, and their outputs☆10Updated 3 months ago
- The official PySCeS project source code repository.☆38Updated 3 months ago
- Python wrapper around cvodes (from the sundials library)☆34Updated 2 months ago
- A tool for creating Python implementations of SBML models.☆13Updated 2 years ago
- Modeling toolkit for biochemical simulation☆74Updated last month
- StochPy is a versatile stochastic modeling package which is designed for stochastic simulation of molecular control networks☆40Updated 2 years ago
- GenSSI 2.0 - Generating Series for testing Structural Identifiability☆14Updated 11 months ago
- Whole-cell modeling tutorials☆16Updated 4 years ago
- Tool to convert an ODE model specified in the YAML format to SBML.☆12Updated last year
- Simulation platform of animal embryogenesis☆20Updated 2 years ago
- Python Environment for Modeling and Simulating Biological Systems☆113Updated last month
- Models that demonstrate the syntax and functionality of BioNetGen language and simulation tools.☆15Updated last year