Data2Dynamics / d2dLinks
a modeling environment tailored to parameter estimation in dynamical systems
☆64Updated 6 months ago
Alternatives and similar repositories for d2d
Users that are interested in d2d are comparing it to the libraries listed below
Sorting:
- Parameter estimation for dynamical models using high-performance computing, batch and mini-batch optimizers, and dynamic load balancing.☆22Updated last month
- High-performance sensitivity analysis for large ordinary differential equation models☆129Updated last week
- PESTO: Parameter EStimation TOolbox, Bioinformatics, btx676, 2017.☆27Updated 5 years ago
- PEtab - an SBML and TSV based data format for parameter estimation problems in systems biology☆61Updated last week
- StochPy is a versatile stochastic modeling package which is designed for stochastic simulation of molecular control networks☆43Updated 7 months ago
- MOCCASIN translates basic ODE-based MATLAB models of biological processes into SBML format.☆12Updated last year
- PyDSTool main development repo☆176Updated 2 years ago
- Jupyter widget for the dynamic and static visualizations of systems biology models written in PySB, BNGL, and SBML☆27Updated 2 years ago
- Python utilities for SBML☆41Updated this week
- emgr -- EMpirical GRamian Framework☆20Updated 2 years ago
- A collection of mathematical models with experimental data in the PEtab format as benchmark problems in order to evaluate new and existin…☆29Updated 3 weeks ago
- Python wrapper around cvodes (from the sundials library)☆35Updated 4 months ago
- Rule-based modeling framework☆65Updated 7 months ago
- Fast and flexible code for solving the inverse Ising/Potts inference problem☆27Updated 2 years ago
- A Python toolbox for COPASI☆13Updated last year
- Encoding Dynamic Flux Balance Analysis in SBML☆12Updated 5 years ago
- Models that demonstrate the syntax and functionality of BioNetGen language and simulation tools.☆15Updated 2 years ago
- python Parameter EStimation TOolbox☆266Updated this week
- a collection of modern sparse (regularized) linear regression algorithms.☆65Updated 5 years ago
- Matlab interface for calling Julia☆30Updated 10 years ago
- COPASI is a software application for simulation and analysis of biochemical networks and their dynamics.☆123Updated last week
- GPU-accelerated multicellular modelling framework☆71Updated 9 months ago
- libRoadRunner: A high-performance SBML simulator☆55Updated 2 weeks ago
- Documentation, models and code relating to the 3rd edition of the textbook Stochastic Modelling for Systems Biology☆32Updated 2 months ago
- SIAN (Structural Identifiability ANalyser) is a software for assessing structural identifiability of ODE models.☆22Updated 2 years ago
- [MATLAB] The only colormap generator you will ever need! Beautiful, distinctive colormaps that desaturate to grayscale but keep the seque…☆25Updated 3 weeks ago
- CompuCell3D public source code repository☆79Updated last week
- Whole-cell modeling tutorials☆16Updated 5 years ago
- BioSCRAPE (Bio-circuit Stochastic Single-cell Reaction Analysis and Parameter Estimation)☆29Updated 9 months ago
- Solve symbolically defined systems of non-linear equations numerically.☆52Updated 5 months ago