Data2Dynamics / d2dLinks
a modeling environment tailored to parameter estimation in dynamical systems
☆59Updated last month
Alternatives and similar repositories for d2d
Users that are interested in d2d are comparing it to the libraries listed below
Sorting:
- Parameter estimation for dynamical models using high-performance computing, batch and mini-batch optimizers, and dynamic load balancing.☆22Updated 4 months ago
- MOCCASIN translates basic ODE-based MATLAB models of biological processes into SBML format.☆12Updated 10 months ago
- PESTO: Parameter EStimation TOolbox, Bioinformatics, btx676, 2017.☆26Updated 5 years ago
- PEtab - an SBML and TSV based data format for parameter estimation problems in systems biology☆61Updated 2 weeks ago
- Python utilities for SBML☆41Updated 2 weeks ago
- Modeling toolkit for biochemical simulation☆74Updated 5 months ago
- High-performance sensitivity analysis for large ordinary differential equation models☆120Updated this week
- Encoding Dynamic Flux Balance Analysis in SBML☆12Updated 4 years ago
- emgr -- EMpirical GRamian Framework☆19Updated last year
- a C library for symbolic and numerical analysis of a system of ordinary differential equations (ODEs) derived from a chemical reaction ne…☆22Updated 7 years ago
- Jupyter widget for the dynamic and static visualizations of systems biology models written in PySB, BNGL, and SBML☆27Updated 2 years ago
- A Python toolbox for COPASI☆13Updated last year
- StochPy is a versatile stochastic modeling package which is designed for stochastic simulation of molecular control networks☆42Updated this week
- Python wrapper around cvodes (from the sundials library)☆34Updated this week
- Simulation platform of animal embryogenesis☆20Updated 3 years ago
- Models that demonstrate the syntax and functionality of BioNetGen language and simulation tools.☆15Updated 2 years ago
- Data-Driven Constraint-based analysis☆12Updated 2 years ago
- libRoadRunner: A high-performance SBML simulator☆50Updated this week
- Whole-cell modeling tutorials☆16Updated 5 years ago
- Python package for working with PEtab files☆14Updated last month
- Standalone Python package containing libSBML with support for SBML Level 3 Core and accepted SBML Level 3 packages.☆23Updated last month
- A tool for creating Python implementations of SBML models.☆14Updated 2 years ago
- A collection of mathematical models with experimental data in the PEtab format as benchmark problems in order to evaluate new and existin…☆29Updated 3 weeks ago
- The SBML Test Suite is a conformance testing system. It allows developers and users to test the degree and correctness of the SBML suppor…☆26Updated 2 months ago
- python Parameter EStimation TOolbox☆249Updated last month
- COPASI is a software application for simulation and analysis of biochemical networks and their dynamics.☆109Updated this week
- Ontology of algorithms for analyzing biological models, their parameters, and their outputs☆10Updated 6 months ago
- A MATLAB toolbox for analysing structural properties of nonlinear models (identifiability, observability, accessibility, controllability)☆28Updated last month
- HAL (Hybrid Automata Library) is the one-stop shop for all of your hybrid modeling needs☆37Updated 10 months ago
- Model selection for PEtab☆12Updated 4 months ago