yaml2sbml-dev / yaml2sbmlLinks
Tool to convert an ODE model specified in the YAML format to SBML.
☆12Updated 2 years ago
Alternatives and similar repositories for yaml2sbml
Users that are interested in yaml2sbml are comparing it to the libraries listed below
Sorting:
- Python package for working with PEtab files☆16Updated last week
- A collection of mathematical models with experimental data in the PEtab format as benchmark problems in order to evaluate new and existin…☆28Updated this week
- PEtab - an SBML and TSV based data format for parameter estimation problems in systems biology☆60Updated last week
- This is the fully public version of QSP Toolbox. Please check the README file for the current version of MATLAB that is supported.☆25Updated last month
- Dynamic modeling and parameter estimation in R☆22Updated 8 months ago
- The R package manager that is blazingly fast ⚡. Powered by mamba.☆77Updated 3 years ago
- The SBML Test Suite is a conformance testing system. It allows developers and users to test the degree and correctness of the SBML suppor…☆26Updated 3 months ago
- Benchmarking and metadata tracking for Python. Extensible, with distributed/cluster support.☆20Updated 3 weeks ago
- Collection of National Science Foundation (NSF) proposal templates: pitches, general applications, etc.☆15Updated 2 years ago
- Standalone Python package containing libSBML with support for SBML Level 3 Core and accepted SBML Level 3 packages.☆23Updated last month
- High-performance sensitivity analysis for large ordinary differential equation models☆127Updated this week
- Jupyter widget for the dynamic and static visualizations of systems biology models written in PySB, BNGL, and SBML☆27Updated 2 years ago
- A tool for creating Python implementations of SBML models.☆15Updated 3 years ago
- The CWL v1.0 - v1.2 user guide☆43Updated last month
- MOCCASIN translates basic ODE-based MATLAB models of biological processes into SBML format.☆12Updated last year
- cy3sbml: SBML for Cytoscape 3☆14Updated 3 weeks ago
- Python package for building SBML models without needing to use libSBML.☆10Updated 4 years ago
- Online material for the Perspective: "Julia for Biologists" presented at JuliaCon 2021: https://www.youtube.com/watch?v=gRj7E5kYG1I☆101Updated 3 years ago
- The mwtab package is a Python library that facilitates reading and writing files in mwTab format used by the Metabolomics Workbench for a…☆12Updated 2 weeks ago
- Generate a CFF file using the metadata from a software release on Zenodo.☆22Updated 2 years ago
- An application for parameterization of biological models available in SBML and BNGL formats. Features include parallelization, metaheuris…☆24Updated 3 months ago
- ☆34Updated 2 years ago
- examples of using slurm in life sciences workflows using posix file systems and object storage☆40Updated last year
- 📖 Generation and Applications of Knowledge Graphs in Systems and Networks Biology☆30Updated 5 years ago
- Parameter estimation for dynamical models using high-performance computing, batch and mini-batch optimizers, and dynamic load balancing.☆22Updated 9 months ago
- Build and deploy Singularity containers to GitHub releases, and pull with the singularity-hpc client☆17Updated 2 years ago
- S4 Generic Summary Statistic Functions that Operate on Matrix-Like Objects☆12Updated 3 weeks ago
- Command-line utilities to manage JOSS submissions. May one day be a sentient being.☆27Updated last year
- Python library for calling Cytoscape Automation via CyREST☆84Updated 3 months ago
- LibSBML is a native library for reading, writing and manipulating files and data streams containing the Systems Biology Markup Language (…☆54Updated 2 weeks ago