Tool to convert an ODE model specified in the YAML format to SBML.
☆13Jun 13, 2023Updated 3 years ago
Alternatives and similar repositories for yaml2sbml
Users that are interested in yaml2sbml are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Python package for working with PEtab files☆17Updated this week
- PEtab - an SBML and TSV based data format for parameter estimation problems in systems biology☆64Jun 22, 2026Updated last week
- A collection of mathematical models with experimental data in the PEtab format as benchmark problems in order to evaluate new and existin…☆33Jun 25, 2026Updated last week
- Model selection for PEtab☆14Jun 22, 2026Updated last week
- Parameter estimation for dynamical models using high-performance computing, batch and mini-batch optimizers, and dynamic load balancing.☆21Dec 15, 2025Updated 6 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- High-performance sensitivity analysis for large ordinary differential equation models☆140Updated this week
- Encoding Dynamic Flux Balance Analysis in SBML☆12Sep 16, 2020Updated 5 years ago
- ☆11Feb 6, 2017Updated 9 years ago
- Ontology of algorithms for analyzing biological models, their parameters, and their outputs☆12Mar 31, 2026Updated 3 months ago
- ☆11Dec 16, 2024Updated last year
- R devel with ASAN / UBSAN sanitizers☆11Jun 23, 2026Updated last week
- A viral haplotype reconstruction tool for long reads.☆15Jun 3, 2026Updated 3 weeks ago
- Easy Maximum A Posteriori Bayesian Estimation of PK parameters in R.☆25May 12, 2026Updated last month
- Front-end code for Serratus project website☆12Jul 2, 2024Updated 2 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- TeX tables for pharmacometrics.☆11May 22, 2026Updated last month
- R package installation and management - reimagined.☆40Nov 24, 2025Updated 7 months ago
- Polars IO plugin for reading compressed CSV/TSV files in a streaming fashion☆23Feb 24, 2025Updated last year
- nonmem2rx☆14Jun 15, 2026Updated 2 weeks ago
- The goal of babelmixr2 is to interface nlmixr2 with other pharmacometric tools☆14Jun 18, 2026Updated 2 weeks ago
- ☆10Dec 4, 2019Updated 6 years ago
- Wingpanel Ayatana-Compatibility Indicator☆13Dec 18, 2017Updated 8 years ago
- Accompanying code for AAAI 2021 publication - High-Dimensional Bayesian Optimization via Tree-Structured Additive Models☆11Jun 19, 2024Updated 2 years ago
- Single-cell Iso Prep☆17Oct 28, 2023Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Mass Action Stoichiometric Simulation (MASS) Toolbox☆13Aug 1, 2017Updated 8 years ago
- Dynamic FBA for use with COBRApy metabolic models☆10Sep 26, 2023Updated 2 years ago
- Jupyter widget for the dynamic and static visualizations of systems biology models written in PySB, BNGL, and SBML☆28Mar 13, 2023Updated 3 years ago
- ☆17Jun 15, 2026Updated 2 weeks ago
- Package to Compute VPC Percentiles & Prediction Intervals Developed by Certara☆11Jun 2, 2026Updated last month
- R bindings for the plog C++ logging library☆25May 23, 2026Updated last month
- A multi-reference network annotation tool to support omics analysis☆12May 31, 2022Updated 4 years ago
- Registry of containerized biosimulation tools that support a standard command-line interface☆15May 28, 2026Updated last month
- ☆10Jul 4, 2019Updated 6 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Python implementation of the BRIM algorithm for bipartite community structure detection.☆12Aug 11, 2022Updated 3 years ago
- MOCCASIN translates basic ODE-based MATLAB models of biological processes into SBML format.☆13Aug 21, 2024Updated last year
- Python package for building SBML models without needing to use libSBML.☆11Aug 18, 2021Updated 4 years ago
- Code for the ASteCA package.☆24May 28, 2026Updated last month
- R code for single-cell analysis of intestinal epithelial cells☆23Nov 18, 2017Updated 8 years ago
- A tool for creating Python implementations of SBML models.☆15Oct 5, 2022Updated 3 years ago
- ELECTOR: EvaLuator of Error Correction Tools for lOng Reads☆15May 27, 2021Updated 5 years ago