Tool to convert an ODE model specified in the YAML format to SBML.
☆12Jun 13, 2023Updated 2 years ago
Alternatives and similar repositories for yaml2sbml
Users that are interested in yaml2sbml are comparing it to the libraries listed below
Sorting:
- Python package for working with PEtab files☆16Feb 4, 2026Updated 3 weeks ago
- A collection of mathematical models with experimental data in the PEtab format as benchmark problems in order to evaluate new and existin…☆31Feb 11, 2026Updated 2 weeks ago
- PEtab - an SBML and TSV based data format for parameter estimation problems in systems biology☆62Updated this week
- Parameter estimation for dynamical models using high-performance computing, batch and mini-batch optimizers, and dynamic load balancing.☆22Dec 15, 2025Updated 2 months ago
- High-performance sensitivity analysis for large ordinary differential equation models☆132Updated this week
- The Systems Biology Ontology (SBO) is a set of controlled, relational vocabularies of terms commonly used in Systems Biology, and in part…☆11May 16, 2023Updated 2 years ago
- Ontology of algorithms for analyzing biological models, their parameters, and their outputs☆11Dec 2, 2024Updated last year
- ☆11Feb 6, 2017Updated 9 years ago
- Trust Region Optimization in Python☆28Nov 11, 2025Updated 3 months ago
- Encoding Dynamic Flux Balance Analysis in SBML☆12Sep 16, 2020Updated 5 years ago
- sensobol: Computation of high-order Sobol' sensitivity indices☆16Jul 24, 2025Updated 7 months ago
- python Parameter EStimation TOolbox☆266Feb 24, 2026Updated last week
- Easy Maximum A Posteriori Bayesian Estimation of PK parameters in R.☆25Feb 1, 2026Updated last month
- A Typst template for "Tufte" style handouts with side notes☆20Jun 30, 2023Updated 2 years ago
- PESTO: Parameter EStimation TOolbox, Bioinformatics, btx676, 2017.☆27Mar 2, 2020Updated 6 years ago
- VehicleSim☆18Apr 8, 2025Updated 10 months ago
- XPO represents anatomical, cellular, and gene function phenotypes occurring throughout the development of the African frogs Xenopus laevi…☆11Jul 25, 2025Updated 7 months ago
- distributed, likelihood-free inference☆216Updated this week
- ☆15Mar 15, 2022Updated 3 years ago
- Automated NONMEM to mrgsolve Translation☆11Mar 18, 2025Updated 11 months ago
- PSI-MOD ontology for modified and unmodified amino acid residues☆14Jan 8, 2026Updated last month
- This is a telegram bot for correcting language mistakes in group chats☆10Jun 29, 2021Updated 4 years ago
- A generic PK/PD simulation platform based on rxode2 and mrgsolve engines.☆10Jan 28, 2026Updated last month
- Visualize machine learning models with Netron in VSCode☆15Nov 23, 2025Updated 3 months ago
- Машинне навчання для інженерів із систем керування☆11Jul 19, 2023Updated 2 years ago
- Beiwe is a smartphone-based digital phenotyping research platform. This repository contains some data analysis code.☆14Feb 10, 2020Updated 6 years ago
- The goal of babelmixr2 is to interface nlmixr2 with other pharmacometric tools☆13Nov 28, 2025Updated 3 months ago
- An Oberon-07 Compiler for the ESP32 Processor☆10Jan 4, 2021Updated 5 years ago
- Dynamic FBA for use with COBRApy metabolic models☆10Sep 26, 2023Updated 2 years ago
- Scripts, data files and ontologies for the FLOPO project☆10Sep 6, 2019Updated 6 years ago
- NER as a (Micro)Service☆10Jan 11, 2017Updated 9 years ago
- 贝词，vscode扩展插件，程序员摸鱼学英语必备，vs code文件列表风格，让你毫无顾忌、放肆的记单词。☆12Jul 7, 2025Updated 7 months ago
- Async TLS (Secure Socket) for the Tardy runtime☆13Mar 12, 2025Updated 11 months ago
- Engaging visualisations, made easy.☆14Aug 7, 2024Updated last year
- Pharmacokinetic data for testing software with real and simulated data.☆15Feb 15, 2023Updated 3 years ago
- Backward-compatible shim for log/slog☆10Oct 15, 2024Updated last year
- Automatically add complete brackets when writing interpolated string☆10Jul 19, 2023Updated 2 years ago
- R devel with ASAN / UBSAN sanitizers☆11Feb 24, 2026Updated last week
- Python bindings for the htmd Rust library, a fast HTML to Markdown converter☆11Feb 23, 2026Updated last week