satoken / ipknotLinks
Integer programming based prediction of RNA secondary structures with pseudoknots
☆21Updated last month
Alternatives and similar repositories for ipknot
Users that are interested in ipknot are comparing it to the libraries listed below
Sorting:
- ☆36Updated last year
- An ultra-high-performance protein-protein docking for heterogeneous supercomputers☆63Updated last year
- Universal Structure Alignment of Monomeric and Complex Structure of Nucleic Acids and Proteins☆155Updated 4 months ago
- Direct coupling analysis software for protein and RNA sequences☆52Updated last month
- 🔧rna-tools: a toolbox to analyze sequences, structures and simulations of RNA (and more) used by RNA CASP, RNA PUZZLES, and me ;-) docs …☆177Updated last month
- AlphaFill is an algorithm based on sequence and structure similarity that “transplants” missing compounds to the AlphaFold models. By add…☆104Updated 3 months ago
- Rapid protein-protein interaction network creation from multiple sequence alignments with Deep Learning☆91Updated last year
- Inference of couplings in proteins and RNAs from sequence variation☆112Updated 2 years ago
- MMseqs2 app to run on your workstation or servers☆92Updated this week
- Code repository of "Deep generative design of RNA family sequences"☆35Updated last year
- A tool for accurate prediction of a protein's secondary structure from only it's amino acid sequence☆58Updated 4 months ago
- ☆68Updated 11 months ago
- Geometric deep learning of protein–DNA binding specificity☆76Updated 5 months ago
- PyMOL extension to color AlphaFold structures by confidence (pLDDT).☆108Updated last year
- Code and data to reproduce analyses in Biswas et al. (2020) "Low-N protein engineering with data-efficient deep learning".☆59Updated 4 years ago
- Multiple Protein Structure Alignment at Scale with FoldMason☆186Updated this week
- ☆51Updated 2 weeks ago
- Mutation effects predicted from sequence co-variation☆68Updated 7 years ago
- Evolutionary velocity with protein language models☆94Updated last year
- Protein language model trained on coding DNA☆49Updated 10 months ago
- ☆30Updated last year
- ☆36Updated 7 months ago
- ☆43Updated 11 months ago
- ☆107Updated last year
- ColabFold protocol☆52Updated 10 months ago
- RNA Multiple Sequence Alignment☆43Updated 2 years ago
- ☆33Updated last year
- Fast protein structure searching or your money back☆111Updated 4 months ago
- Physicochemical properties, indices and descriptors for amino-acid sequences.☆101Updated last month
- Deep mutational scanning of the receptor-binding domain of SARS-CoV-2 Spike☆45Updated 3 years ago