satoken / ipknotLinks
Integer programming based prediction of RNA secondary structures with pseudoknots
☆21Updated 2 months ago
Alternatives and similar repositories for ipknot
Users that are interested in ipknot are comparing it to the libraries listed below
Sorting:
- 🔧rna-tools: a toolbox to analyze sequences, structures and simulations of RNA (and more) used by RNA CASP, RNA PUZZLES, and me ;-) docs …☆181Updated this week
- AlphaFill is an algorithm based on sequence and structure similarity that “transplants” missing compounds to the AlphaFold models. By add…☆110Updated last week
- MMseqs2 app to run on your workstation or servers☆105Updated this week
- Rapid protein-protein interaction network creation from multiple sequence alignments with Deep Learning☆90Updated last year
- ☆38Updated 2 years ago
- ☆33Updated last year
- Physicochemical properties, indices and descriptors for amino-acid sequences.☆113Updated 5 months ago
- PyMOL extension to color AlphaFold structures by confidence (pLDDT).☆122Updated last year
- Universal Structure Alignment of Monomeric and Complex Structure of Nucleic Acids and Proteins☆174Updated this week
- An ultra-high-performance protein-protein docking for heterogeneous supercomputers☆71Updated 2 years ago
- Deep mutational scanning of the receptor-binding domain of SARS-CoV-2 Spike☆46Updated 3 years ago
- predict stability change upon mutation☆30Updated last year
- PSIPRED Protein Secondary Structure Predictor☆58Updated 7 months ago
- Direct coupling analysis software for protein and RNA sequences☆58Updated 6 months ago
- scripts and facilities for in-silico mutagenesis with FoldX☆66Updated last month
- Fast and accurate protein structure prediction☆57Updated last year
- Code and data to reproduce analyses in Biswas et al. (2020) "Low-N protein engineering with data-efficient deep learning".☆60Updated 4 years ago
- Mutation effects predicted from sequence co-variation☆72Updated 8 years ago
- Neural Networks for Protein Sequence Alignment☆135Updated last year
- Evolutionary velocity with protein language models☆95Updated 2 months ago
- PLMSearch enables accurate and fast homologous protein search with only sequences as input☆78Updated 4 months ago
- ☆47Updated last year
- GTalign, high-performance protein structure alignment, superposition and search☆54Updated 5 months ago
- Graph Network for protein-protein interface including language model features☆34Updated last year
- A tool for accurate prediction of a protein's secondary structure from only it's amino acid sequence☆63Updated 10 months ago
- Multiple Protein Structure Alignment at Scale with FoldMason☆225Updated last week
- A domain parser for Alphafold models☆46Updated 2 years ago
- Inference of couplings in proteins and RNAs from sequence variation☆116Updated 3 years ago
- Automatic oligonucleotide design for PCR-based gene synthesis☆51Updated 2 months ago
- ☆76Updated last year