Prepare topology and coordinate file for CG models in Genesis.
☆13Jul 3, 2025Updated 8 months ago
Alternatives and similar repositories for genesis_cg_tool
Users that are interested in genesis_cg_tool are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- generate pseudo-AFM image file from structure file☆15May 15, 2024Updated last year
- C++11/Python3 library to read/write High Speed AFM data file☆14Apr 14, 2023Updated 2 years ago
- general purpose coarse-grained molecular dynamics simulation package☆35Jan 27, 2023Updated 3 years ago
- GraphVAMPnets combines graph neural networks with variational approach for Markovian process (VAMP) theory to identify the slow collectiv…☆12Feb 20, 2024Updated 2 years ago
- A domain specific language for creating scientific pipelines☆15Mar 11, 2026Updated 2 weeks ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- Source, test set, and document for Molecular Dynamics software, GENESIS.☆41Jan 7, 2026Updated 2 months ago
- MDToolbox.jl: A Julia package for molecular dynamics trajectories analysis and modeling of biomolecules☆21Mar 21, 2025Updated last year
- Sample code for "Predicting polymer-solvent miscibility using machine-learned Flory-Huggins interaction parameters☆17Mar 27, 2024Updated last year
- This repository provides with custom code and analysis scripts to generate structural ensembles of intrinsically disordered proteins by u…☆22Oct 31, 2025Updated 4 months ago
- 『Pythonで動かしてはじめる量子化学計算』(コロナ社,2024)☆24Jun 5, 2024Updated last year
- 分子シミュレーションの理論や関連するトピックをまとめたノート☆28Mar 7, 2024Updated 2 years ago
- GPU移植のための実装例(直接法に基づくN体計算)☆17Dec 8, 2025Updated 3 months ago
- LaTeXで書かれた日本語の論文やレポートの簡単なチェックツール☆10Jan 31, 2024Updated 2 years ago
- The finite-size scaling methods for critical phenomena☆10Sep 8, 2022Updated 3 years ago
- NordVPN Threat Protection Pro™ • AdTake your cybersecurity to the next level. Block phishing, malware, trackers, and ads. Lightweight app that works with all browsers.
- Tutorial files☆12Aug 7, 2024Updated last year
- Coarse-grained molecular model of DNA (LAMMPS plugin)☆17Apr 12, 2022Updated 3 years ago
- DJ mixer for web browser☆21Feb 1, 2015Updated 11 years ago
- A repository for singly and doubly linked lists in Julia☆15Mar 1, 2022Updated 4 years ago
- DiAMoNDBack: Diffusion-denoising Autoregressive Model for Non-Deterministic Backmapping of Cα Protein Traces☆19May 7, 2025Updated 10 months ago
- Build hydrogen atoms from united-atom molecular dynamics of lipids and calculate the order parameters.☆16Dec 20, 2022Updated 3 years ago
- A fully GPU-accelerated molecular dynamics program for the Martini force field☆35Sep 13, 2023Updated 2 years ago
- ☆14Jun 4, 2024Updated last year
- JAX/Flax implementation of finite-size scaling☆15Jan 15, 2023Updated 3 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- GROMACS implementation of TraPPE-UA force field with HH-Alkane modifications☆14Sep 24, 2022Updated 3 years ago
- Tachyon library, written by John Stone☆14Sep 5, 2019Updated 6 years ago
- Tool to generate markdown files from lean files. This is heavily inspired by lean2md.☆24Updated this week
- 4D Genome Reconstruction and Dynamics Prediction: Maximum Entropy Based HI-C/Distance Map - Polymer Physics - Structures Method☆13Updated this week
- Program to find drug-like RNA-ligand binding pockets.☆24Mar 19, 2026Updated last week
- Examples and data for performing path similarity analysis (PSA).☆17Oct 23, 2015Updated 10 years ago
- 分子動力学法ステップ・バイ・ステップ☆17Oct 13, 2019Updated 6 years ago
- A Key-Value Dictionary for Fortran implemented with a hashtable and singly-linked lists.☆19Apr 17, 2018Updated 7 years ago
- ☆17Apr 9, 2024Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- Integration of the Fortran standard library in CMake projects☆17Sep 11, 2021Updated 4 years ago
- Geometric super-resolution for molecular geometries☆42Jun 15, 2022Updated 3 years ago
- A software package to identify and locate knots in polymers☆14Nov 20, 2022Updated 3 years ago
- Sample molecular simulation workflows using a MoSDeF and community tools☆17Jul 19, 2022Updated 3 years ago
- ☆17Apr 22, 2020Updated 5 years ago
- Neural network model for prediction of amino-acid sequence from a protein backbone structure☆25Mar 5, 2025Updated last year
- A library for flexible and easy to use error handling in Fortran projects☆19Oct 9, 2023Updated 2 years ago