jaswindersingh2 / SPOT-RNA2Links
Improved RNA Secondary Secondary Structure Prediction using Evolutionary Profile, Mutational Coupling and Two-dimensional Transfer Learning
☆34Updated 4 years ago
Alternatives and similar repositories for SPOT-RNA2
Users that are interested in SPOT-RNA2 are comparing it to the libraries listed below
Sorting:
- RNA Multiple Sequence Alignment☆46Updated 2 years ago
- RNA Secondary Structure Prediction using an Ensemble of Two-dimensional Deep Neural Networks and Transfer Learning.☆105Updated 5 months ago
- ☆50Updated 2 years ago
- Protein language model trained on coding DNA☆51Updated last year
- The DSSP building software☆47Updated 2 years ago
- ☆109Updated last year
- Fast deep learning methods for large-scale protein-protein interaction screening☆99Updated 3 months ago
- Code and data to reproduce analyses in Biswas et al. (2020) "Low-N protein engineering with data-efficient deep learning".☆59Updated 4 years ago
- ☆54Updated 3 months ago
- Graph Network for protein-protein interface including language model features☆33Updated last year
- ☆36Updated 10 months ago
- An unofficial re-implementation of AntiBERTy, an antibody-specific protein language model, in PyTorch.☆25Updated last year
- A structure-aware interpretable deep learning model for sequence-based prediction of protein-protein interactions☆104Updated 2 weeks ago
- Code repository of "Deep generative design of RNA family sequences"☆38Updated last week
- Public repository describing training and testing of AntiBERTa.☆61Updated 2 years ago
- ☆37Updated last year
- ☆45Updated 7 months ago
- Code associated with "Biophysical prediction of protein-peptide interactions and signaling networks using machine learning."☆70Updated last year
- NodeCoder is a general framework based on graph convolutional neural network for protein function prediction.☆33Updated last year
- Direct coupling analysis software for protein and RNA sequences☆53Updated 3 months ago
- Predict the structure of immune receptor proteins☆57Updated last year
- AlphaFold-initiated replica exchange protein docking☆84Updated 5 months ago
- The official pytorch implementation of "LightRoseTTA: High-efficient and Accurate Protein Structure Prediction Using an Ultra-Lightweight…☆15Updated 7 months ago
- Neural networks for deep mutational scanning data☆70Updated 5 months ago
- Download pdb/protein structures using Uniprot id; This script will download related PDB files, extract chains(Optional), remove duplicate…☆45Updated last year
- Geometry-aware protein binding site predictor☆25Updated last year
- GraphSite: protein-DNA binding site prediction using graph transformer and predicted protein structures☆61Updated last year
- A Memetic Algorithm boosts accuracy and speed of all-atom protein-protein docking☆29Updated 4 months ago
- ☆23Updated 4 years ago
- ☆47Updated 10 months ago