jaswindersingh2 / SPOT-RNA2Links
Improved RNA Secondary Secondary Structure Prediction using Evolutionary Profile, Mutational Coupling and Two-dimensional Transfer Learning
☆31Updated 4 years ago
Alternatives and similar repositories for SPOT-RNA2
Users that are interested in SPOT-RNA2 are comparing it to the libraries listed below
Sorting:
- Protein language model trained on coding DNA☆47Updated 8 months ago
- ☆107Updated last year
- RNA Multiple Sequence Alignment☆43Updated last year
- ☆35Updated last year
- ☆35Updated 6 months ago
- RNA Secondary Structure Prediction using an Ensemble of Two-dimensional Deep Neural Networks and Transfer Learning.☆104Updated last month
- Code and data to reproduce analyses in Biswas et al. (2020) "Low-N protein engineering with data-efficient deep learning".☆59Updated 4 years ago
- Predict the structure of immune receptor proteins☆51Updated 8 months ago
- Neural networks for deep mutational scanning data☆69Updated last month
- GraphSite: protein-DNA binding site prediction using graph transformer and predicted protein structures☆60Updated 11 months ago
- ☆69Updated 2 months ago
- Prediction of binding residues for metal ions, nucleic acids, and small molecules.☆32Updated 7 months ago
- A structure-aware interpretable deep learning model for sequence-based prediction of protein-protein interactions☆100Updated last week
- ☆50Updated 3 months ago
- Rapid protein-protein interaction network creation from multiple sequence alignments with Deep Learning☆89Updated last year
- Fast deep learning methods for large-scale protein-protein interaction screening☆46Updated 2 months ago
- The DSSP building software☆44Updated last year
- Protein design and variant prediction using autoregressive generative models☆106Updated last year
- PLM based active learning model for protein engineering☆82Updated 11 months ago
- Code associated with "Biophysical prediction of protein-peptide interactions and signaling networks using machine learning."☆72Updated last year
- Direct coupling analysis software for protein and RNA sequences☆50Updated 2 months ago
- A tool for accurate prediction of a protein's secondary structure from only it's amino acid sequence☆55Updated 3 months ago
- ☆23Updated 4 years ago
- LoRA for protein language models☆40Updated last year
- AlphaFill is an algorithm based on sequence and structure similarity that “transplants” missing compounds to the AlphaFold models. By add…☆101Updated 2 months ago
- Embedding-based annotation transfer (EAT) uses Euclidean distance between vector representations (embeddings) of proteins to transfer ann…☆37Updated 5 months ago
- predict stability change upon mutation☆28Updated last year
- Fast AlphaFold-Multimer based pipeline for Protein-Protein Interaction (PPI) screening☆39Updated 9 months ago
- scripts and facilities for in-silico mutagenesis with FoldX☆57Updated this week
- AlphaLink2: Integrating crosslinking MS data into Uni-Fold-Multimer☆57Updated last month