Improved RNA Secondary Secondary Structure Prediction using Evolutionary Profile, Mutational Coupling and Two-dimensional Transfer Learning
☆37Apr 3, 2021Updated 5 years ago
Alternatives and similar repositories for SPOT-RNA2
Users that are interested in SPOT-RNA2 are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Single-sequence and Profile-based Prediction of RNA Solvent Accessibility Using Dilated Convolution Neural Network☆13Jun 22, 2022Updated 4 years ago
- RNA Secondary Structure Prediction using an Ensemble of Two-dimensional Deep Neural Networks and Transfer Learning.☆106May 23, 2025Updated last year
- Sum-Product Networks (SPNs) for Robust Automatic Speaker Identification.☆11Aug 30, 2020Updated 6 years ago
- CNN model based on Google Inception model to predict regression values of regression values of Tetrahymena pyriformis IGC50 from 2D imag…☆20Nov 14, 2018Updated 7 years ago
- Deep Residual-Dense Lattice Network for Speech Enhancement☆25Nov 14, 2019Updated 6 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Materials for "RNA secondary structure prediction with Convolutional Neural Networks" published in BMC Bioinformatics.☆14May 3, 2023Updated 3 years ago
- ☆79Apr 22, 2025Updated last year
- ☆22Dec 20, 2024Updated last year
- Proof of the concept implementation of smiles2vec paper☆34Apr 17, 2019Updated 7 years ago
- SPOT-1D-LM: Reaching Alignment-profile-based Accuracy in Predicting Protein Secondary and Tertiary Structural Properties without Alignmen…☆11Feb 1, 2024Updated 2 years ago
- Robust RNA structure refinement by a nucleobase-centric sampling algorithm coupled with a backbone rotameric and quantum-mechanical-energ…☆20Apr 3, 2021Updated 5 years ago
- ☆22Jan 5, 2025Updated last year
- Linear-Time Approximation of RNA Folding Partition Function and Base Pairing Probabilities☆36May 24, 2024Updated 2 years ago
- An end-to-end linear-time algorithm for structural alignment and conserved structure prediction of RNA homologs☆13Jun 28, 2024Updated 2 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Time-Scale Modification For MATLAB☆67Jul 24, 2025Updated last year
- The standalone version / cli-tool of SPOT-Contact-Single available for public use for research purposes.☆16Feb 1, 2024Updated 2 years ago
- Improving Chest X-Ray Report Generation by Leveraging Warm-Starting☆79May 26, 2024Updated 2 years ago
- pip install the deep learning & HPC starter pack to begin your project.☆12Nov 6, 2024Updated last year
- RNA Multiple Sequence Alignment☆53Jul 20, 2023Updated 3 years ago
- CXRMate: Longitudinal Data and a Semantic Similarity Reward for Chest X-Ray Report Generation☆19Feb 20, 2025Updated last year
- MXfold2: RNA secondary structure prediction using deep learning with thermodynamic integration☆163Mar 22, 2026Updated 6 months ago
- Curated structures submitted to the RNA-Puzzles experiment. Download as a zip file https://github.com/mmagnus/RNA-Puzzles-submission/arch…☆11Apr 6, 2023Updated 3 years ago
- ☆10Mar 8, 2024Updated 2 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Centroid RNA package☆20Oct 12, 2020Updated 5 years ago
- Direct coupling analysis software for protein and RNA sequences☆61Jul 21, 2025Updated last year
- The standalone version of SPOT-1D-Single available for public use for research purposes.☆24May 19, 2024Updated 2 years ago
- Scalable Deep Learning for RNA Secondary Structure Prediction☆43Sep 23, 2025Updated last year
- The new source code of the LinearFold, linear-time prediction for RNA secondary structures☆200Apr 4, 2024Updated 2 years ago
- Learning to Generate UTR Sequences for Optimized Ribosome Load and Gene Expression☆25May 11, 2025Updated last year
- Secondary structure prediction of long non-coding RNA: review and experimental comparison of existing approaches, L.A. Bugnon, A.A. Edera…☆22Mar 17, 2024Updated 2 years ago
- ViennaRNA Package consists of a C code library for the prediction and comparison of RNA secondary structures☆15May 20, 2022Updated 4 years ago
- Introductory tutorial on TPS, committor analysis, and (MS)TIS with OpenPathSampling☆20Dec 15, 2025Updated 9 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- bpRNA: Large-scale Annotation and Analysis of RNA Secondary Structure☆52Nov 23, 2023Updated 2 years ago
- pytorch implementation for "RNA Secondary Structure Prediction By Learning Unrolled Algorithms"☆123Apr 7, 2024Updated 2 years ago
- DeepMMSE: A Deep Learning Approach to MMSE-based Noise Power Spectral Density Estimation☆12Jun 4, 2020Updated 6 years ago
- Nucleic Acids Research 2024:RNA-MSM model is an unsupervised RNA language model based on multiple sequences that outputs both embedding a…☆71Jul 22, 2024Updated 2 years ago
- ☆39Dec 15, 2023Updated 2 years ago
- ☆15May 29, 2024Updated 2 years ago
- AnnapuRNA: a scoring function for predicting RNA-small molecule interactions.☆21Apr 5, 2024Updated 2 years ago