mmagnus / RNA-Structural-Bioinformatics-Crash-Course

Related projects ⓘ

Alternatives and complementary repositories for RNA-Structural-Bioinformatics-Crash-Course

• Faezov / PDBrenum
  ☆27Updated 6 months ago
• labstructbioinf / localpdb
  Python package to manage protein structures and their annotations
  ☆40Updated 8 months ago
• brennanaba / ImmuneBuilder
  Predict the structure of immune receptor proteins
  ☆47Updated last week
• ahaldane / Mi3-GPU
  ☆15Updated last year
• PDBeurope / pdbe-api-training
  Interactive Python notebooks for PDBe API training
  ☆45Updated last week
• KULL-Centre / _2024_cagiada_stability
  ☆45Updated 3 weeks ago
• ranganathanlab / bmDCA
  Fork of matteofigliuzzi/bmDCA repository for Boltzmann-machine Direct Coupling Analysis (bmDCA).
  ☆33Updated 4 years ago
• casperg92 / MaSIF_colab
  dMaSIF implementation for google colab
  ☆29Updated last year
• Jnelen / DiffDockHPC
  DiffDock implementation that adds support for HPC execution using Slurm and Singularity
  ☆24Updated last month
• DeepRank / DeepRank-GNN-esm
  Graph Network for protein-protein interface including language model features
  ☆25Updated 7 months ago
• tristanic / pae_to_domains
  Graph-based community clustering approach to extract protein domains from a predicted aligned error matrix
  ☆32Updated 2 years ago
• swanss / peptide_design
  This repository contains code for the paper: "Tertiary motifs as building blocks for the design of protein-binding peptides"
  ☆15Updated 10 months ago
• bwicky / oligomer_hallucination
  ☆35Updated 11 months ago
• rochoa85 / PepFun
  Bioinformatics and Cheminformatics protocols for peptide analysis
  ☆35Updated last year
• AspirinCode / AlphaPPImd
  Exploring the conformational ensembles of protein-protein complexes with transformer-based generative neural networks
  ☆25Updated 5 months ago
• molecularmodelinglab / plantain
  Fast and accurate molecular docking with an AI pose scoring function
  ☆37Updated 9 months ago
• NasimAbdollahi / NodeCoder
  NodeCoder is a general framework based on graph convolutional neural network for protein function prediction.
  ☆31Updated 6 months ago
• JinyuanSun / DDGScan
  DDGScan: an integrated parallel workflow for the in silico point mutation scan of protein
  ☆43Updated 8 months ago
• samgoldman97 / enzyme-datasets
  Enzyme datasets used to benchmark enzyme-substrate promiscuity models
  ☆29Updated 3 years ago
• biofold / ddgun
  predict stability change upon mutation
  ☆27Updated 4 months ago
• matteoferla / pyrosetta-help
  Some scripts that I keep using over and over.
  ☆18Updated 8 months ago
• biotite-dev / molmarbles
  A bridge between Biotite and OpenMM
  ☆13Updated 6 months ago
• Andre-lab / evodock
  A Memetic Algorithm boosts accuracy and speed of all-atom protein-protein docking
  ☆24Updated 7 months ago
• bene837 / af2seq
  ☆38Updated 2 months ago
• RosettaCommons / Rosetta-DL
  A bundle of deep-learning packages for biomolecular structure prediction and design contributed to the Rosetta Commons
  ☆32Updated 2 years ago
• CongLabCode / DPAM
  A domain parser for Alphafold models
  ☆32Updated 11 months ago
• lcbc-epfl / metal-site-prediction
  ☆35Updated 10 months ago
• haddocking / fcc
  Fraction of Common Contacts Clustering Algorithm for Protein Structures
  ☆26Updated 3 years ago
• seanrjohnson / protein_scoring
  Generating and scoring novel enzyme sequences with a variety of models and metrics
  ☆62Updated 4 months ago
• jurgjn / af-protein-universe
  ☆21Updated last year