sanderslab / sanderslab.github.io
Official website for Sanders Lab
☆16Updated 8 months ago
Alternatives and similar repositories for sanderslab.github.io:
Users that are interested in sanderslab.github.io are comparing it to the libraries listed below
- A pixel classification based multiplexed image segmentation pipeline☆87Updated last year
- ☆48Updated 3 years ago
- ☆17Updated 10 months ago
- A Python implementation of the model described in our publication "A convolutional neural network for common-coordinate registration of h…☆25Updated 3 years ago
- ☆64Updated 2 years ago
- nnSVG: scalable method to identify spatially variable genes (SVGs) in spatially-resolved transcriptomics data☆17Updated 2 weeks ago
- Cell tracker designed for tracking intestinal organoids☆21Updated 3 weeks ago
- This Python package will allow you to replicate the experiments from our research on applying Optimal Transport as a similarity metric in…☆39Updated 2 years ago
- Unsupervised cell functional annotation for single-cell RNA-Seq☆22Updated 2 years ago
- ☆14Updated 2 years ago
- Matlab software for the analysis of MERFISH data and the construction of MERFISH probes.☆50Updated 3 years ago
- This contains the dataset for comparing scRNA-seq analysis methods☆90Updated 4 years ago
- ☆25Updated last year
- A toolset for analysis and visualisation of Spatial Transcriptomics datasets.☆18Updated 3 years ago
- SIMPLI is a highly configurable pipeline for the analysis of multiplexed imaging data.☆34Updated last year
- astir | Automated cell identity from single-cell multiplexed imaging and proteomics 🖥🔬✨☆52Updated 8 months ago
- Scripts capable of re-creating figures from Van Valen Lab publications☆18Updated 2 years ago
- Methods for visualization and analysis of spatially-resolved gene expression☆15Updated 3 months ago
- Code related to Swanson, et. al. for TEA-seq, ICICLE-seq, and scATAC-seq data processing, analysis, and visualization☆11Updated 3 years ago
- Spatially aware dimension reduction for spatial transcriptomics.☆43Updated 10 months ago
- ☆15Updated 2 years ago
- Code accompanying our manuscript "Coordinated cellular neighborhoods orchestrate antitumoral immunity at the colorectal cancer invasive f…☆55Updated 3 months ago
- Tool to create images and configuration files for Minerva-Story☆15Updated 3 months ago
- Code accompanying the manuscript "Tissue Schematics map the specialization of immune tissue motifs and their appropriation by tumors"☆10Updated last year
- ☆16Updated 3 years ago
- This repository will host a (continously updated) list of various deep learning methods used in different stages of spatial transcriptomi…☆32Updated 2 years ago
- Accurate and robust imputation of scRNA-seq data☆95Updated 5 years ago
- Deep Generative Modeling of RNA Velocity☆35Updated 3 months ago
- Single-cell exploratory data analysis for RNA-Seq☆40Updated 3 years ago
- Allen Brain Atlas utilities, parsers and data structures☆11Updated 7 years ago