jo-mueller / Slice2Volume
Script that registers Histology slices to volumetric image data
☆11Updated last year
Alternatives and similar repositories for Slice2Volume:
Users that are interested in Slice2Volume are comparing it to the libraries listed below
- Experimental code and examples for: Automated analysis of whole brain vasculature using machine learning☆70Updated 3 years ago
- Intensify3D is an image normalization tool for large scale fluorescent imaging. It corrects heterogeneities in the signal (defined by the…☆18Updated 4 years ago
- AI-enabled Mouse Organ Segmentation☆12Updated 4 years ago
- A 2D-3D histological brain slice registration application for mouse, rat, zebrafish brains.☆37Updated last year
- 3D Extension of the Cellpose Algorithm by Stringer et al., 2021.☆34Updated 2 years ago
- Easy Volumetric Segmentation with Deep Learning☆25Updated 3 weeks ago
- INSPIRE: Intensity and Spatial Information-Based Deformable Image Registration☆12Updated 3 years ago
- Python-based Human-In-the-LOop Workflow: PHILOW is an interactive deep learning-based platform for 3D datasets☆26Updated 2 months ago
- 🔬🖥 Automated Blood Vasculature Analysis of 3D Light-Sheet Image Volumes☆47Updated 10 months ago
- A napari plugin for itk-elastix☆38Updated 10 months ago
- ☆11Updated last year
- Neuroclear is a deep-learning-based Python module to train a deep neural network for the task of applying super-resolution to degraded ax…☆29Updated last month
- MorphoFeatures code and data☆20Updated last year
- An abundance of augmentation layers☆16Updated last week
- CNN for segmenting vasculature☆12Updated last year
- A template repo used to make new napari plugins☆18Updated this week
- Python package for deep learning based image to image transformation☆52Updated 10 months ago
- C++ library and command-line software for processing and analysis of terabyte-scale volume images locally or on a computing cluster.☆54Updated 3 weeks ago
- 3-day workshop to teach biologists how to train and process deep convolutional neural networks for image segmentation through a comprehen…☆12Updated 2 years ago
- Lectures, labs and all documents associated with 3D Morphometrics workshop at FHL (Summer 2019)☆14Updated 5 years ago
- Benchmarking Large Language Models for Bio-Image Analysis Code Generation☆23Updated 5 months ago
- Open-source, GPU accelerated code for deskewing and deconvolving lattice light sheet data☆25Updated 4 years ago
- MultiModal Big Image Data Sharing and Exploration☆14Updated 2 years ago
- MATLAB Elastix wrapper☆27Updated 10 months ago
- Repo for the CZI Imaging Team's napari plugin Alfa Cohort collaboration☆11Updated 3 years ago
- 3D segmention tool☆13Updated 2 years ago
- Optimize image processing workflows in napari☆17Updated 2 years ago
- Process images using SimpleITK in napari☆20Updated 6 months ago
- The ANTsX Ecosystem for Mapping the Mouse Brain☆11Updated 3 weeks ago
- simple package for augmentation of n-dimensional arrays☆32Updated last year