Script that registers Histology slices to volumetric image data
☆11Oct 4, 2023Updated 2 years ago
Alternatives and similar repositories for Slice2Volume
Users that are interested in Slice2Volume are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ilastik plugin for napari☆14Mar 2, 2026Updated 3 weeks ago
- A napari plugin for stitching large multi-positioning datasets in 2/3D+t using multiview-stitcher☆17Mar 4, 2026Updated 2 weeks ago
- How to use Aligning Big Brains and Atlases with Python☆14May 3, 2023Updated 2 years ago
- MagellanMapper is a graphical interface for 3D bioimage annotation, atlas registration, and regional quantification☆22Feb 12, 2026Updated last month
- ZELDA: a 3D Image Segmentation and Parent to Child relation plugin for microscopy image analysis in napari☆25Nov 25, 2025Updated 3 months ago
- General information, resources and dicussions for the BrainGlobe project.☆11Feb 21, 2025Updated last year
- A stable diffusion demo for napari☆11Dec 15, 2023Updated 2 years ago
- Code for the image processing and analysis described our Nature Protocols paper.☆10Jun 26, 2015Updated 10 years ago
- A JupyterBook site for napari workshop materials☆10Jul 11, 2022Updated 3 years ago
- Prototype implementation of napari-integrated CNN training viewer☆14Dec 27, 2024Updated last year
- GPU-accelerated image processing in QuPath☆16Oct 23, 2021Updated 4 years ago
- Process and analyze surfaces using vedo in napari.☆25May 13, 2024Updated last year
- Most of us study and work at the Bio-image Analysis Technology Development group at the DFG Cluster of Excellence “Physics of Life” at th…☆16Jun 27, 2025Updated 8 months ago
- clEsperanto - GPU-accelerated image processing across languages and platforms☆11Feb 13, 2021Updated 5 years ago
- ABBA - Aligning Big Brains and Atlases (2D sections to 3D atlas registration)☆56Mar 13, 2026Updated last week
- Efficient graph data structures and algorithms for fast slicing, visualization, and editing☆13Dec 1, 2025Updated 3 months ago
- GPU-accelerated Image Processing library for C++☆16Updated this week
- 3D shape analysis using deep learning☆31Oct 8, 2025Updated 5 months ago
- 3D segmention tool☆13Apr 6, 2023Updated 2 years ago
- ☆13Aug 16, 2024Updated last year
- A 2D-3D histological brain slice registration application for mouse, rat, zebrafish brains.☆39Nov 24, 2023Updated 2 years ago
- ☆14Jan 25, 2024Updated 2 years ago
- This repository hosts notebooks, information and data for the Quantitative Bio-Image Analysis with Python Course 2022.☆17Nov 10, 2022Updated 3 years ago
- A collection of Image Processing and Analysis (IPA) functions used at the Facility for Advanced Imaging and Microscopy (FAIM)☆20Updated this week
- ImageJ plugin for building figures☆16Sep 13, 2023Updated 2 years ago
- Process images using SimpleITK in napari☆23May 1, 2025Updated 10 months ago
- ☆21Mar 12, 2026Updated last week
- litemind is a Python library designed to empower developers to build sophisticated conversational agents and tools. It provides a flexibl…☆18Mar 10, 2026Updated last week
- ☆13Apr 27, 2020Updated 5 years ago
- 4D reconstruction of developmental trajectories using spherical harmonics☆23Mar 25, 2025Updated 11 months ago
- Library for managing, storage, viewing, and working with spatial transcriptomics data using Imglib2, N5, BigDataViewer and Fiji.☆31May 27, 2025Updated 9 months ago
- A minimal dependency napari plugin giving access to scikit-image functions☆23Sep 3, 2025Updated 6 months ago
- A minimalistic napari plugin to create and save regions of interest and annotations on series of images☆18Apr 8, 2025Updated 11 months ago
- A napari plugin to load & deskew folders of lattice light sheet TIFFs☆13Jan 5, 2026Updated 2 months ago
- Linking napari layers with Matplotlib plots☆43Mar 1, 2026Updated 3 weeks ago
- RITE Dos (Radiotherapy In vivo Two-Dimensional EPID Dosimetry) is MATLAB software package that does just that, provides in vivo dosimetry…☆12Feb 15, 2018Updated 8 years ago
- A plugin that enables image segmentation provided by Allen Institute for Cell Science☆18Nov 18, 2025Updated 4 months ago
- phylogenetic networks using ggplot2 and ggtree☆11Oct 22, 2025Updated 5 months ago
- A web application for medical imaging quality assurance☆22Mar 5, 2023Updated 3 years ago