Generate a package-manager-friendly mouse brain atlases collection.
☆22Aug 4, 2023Updated 2 years ago
Alternatives and similar repositories for mouse-brain-templates
Users that are interested in mouse-brain-templates are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Gentoo System and Image Builder☆11May 10, 2023Updated 2 years ago
- Atlas-based Imaging Data Analysis Pipeline (AIDA) for structural and functional MRI of the mouse brain☆36Feb 20, 2026Updated last month
- Scripts to preprocess mouse MRI/fMRI/dMRI☆12May 22, 2024Updated last year
- A Python package to download neuronal morphologies☆18Apr 8, 2026Updated last week
- A generally applicable whole-brain preprocessing toolbox for mice and rats☆14Jul 11, 2024Updated last year
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Multi-task U-Net for the simultaneous segmentation and skull-stripping of mouse brain MRI☆23Aug 20, 2021Updated 4 years ago
- Developing a Brain Atlas through Deep Learning☆53Aug 9, 2025Updated 8 months ago
- Multi Atlas Segmentation and Morphometric analysis toolkit (MASMAT) for mouse brain MRI☆40Nov 28, 2025Updated 4 months ago
- General information, resources and dicussions for the BrainGlobe project.☆11Feb 21, 2025Updated last year
- Build unbiased anatomical templates from individual images☆12Apr 8, 2026Updated last week
- Automated 3D brain registration with support for multiple species and atlases.☆146Apr 8, 2026Updated last week
- Automated 3D brain registration in napari with support for multiple species and atlases.☆16Jan 5, 2024Updated 2 years ago
- A GUI built on brainrender: visualise brain regions, neurons and labelled cells.☆12Nov 26, 2020Updated 5 years ago
- How to use Aligning Big Brains and Atlases with Python☆14May 3, 2023Updated 2 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- ☆19Apr 6, 2022Updated 4 years ago
- ☆10Dec 18, 2017Updated 8 years ago
- Fancier logging with python.☆16Apr 8, 2026Updated last week
- Analysis code for Schmaelzle, O'Donnell et al. (2017) PNAS☆10May 7, 2017Updated 8 years ago
- Lab Book Database Framework with Input, Output, and Reporting Functions☆14Jul 18, 2022Updated 3 years ago
- ☆33Apr 8, 2026Updated last week
- A draft specification for the nifti-zarr format☆16Dec 5, 2025Updated 4 months ago
- Educational software☆10Nov 6, 2015Updated 10 years ago
- Analyze brain surface/volume (gifti, cifti, nifti) in R and extract networks☆10Oct 4, 2022Updated 3 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Source code of the Scalable Brain Atlas website (scalablebrainatlas.incf.org)☆15Mar 18, 2016Updated 10 years ago
- Algorithms for calculating a zarr checksum against local or cloud storage☆13Feb 2, 2026Updated 2 months ago
- Registration to BrainGlobe atlases in napari using Elastix☆30Apr 8, 2026Updated last week
- Python package providing mesoscale connectivity models for mouse.☆39Apr 3, 2024Updated 2 years ago
- Mouse brain network analysis of rs-fMRI and DTI data using graph theory☆10Jan 16, 2026Updated 3 months ago
- MorphVAE: Generating Neural Morphologies from 3D-Walks☆13Sep 4, 2022Updated 3 years ago
- ☆18Feb 10, 2022Updated 4 years ago
- Multi-Template Mouse Brain MRI Atlas (MBMA): both in-vivo and ex-vivo☆27Jan 20, 2024Updated 2 years ago
- MagellanMapper is a graphical interface for 3D bioimage annotation, atlas registration, and regional quantification☆22Mar 30, 2026Updated 2 weeks ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Provides a local database of in-house and published genomes for Bacteria and Archaea from NCBI☆24Sep 3, 2014Updated 11 years ago
- Continual Online Recalibration with Pseudo-labels☆14Jun 20, 2024Updated last year
- Tools for MRI mouse brain morphometry☆32Jan 16, 2017Updated 9 years ago
- Hennestad et al. 2022☆23Apr 8, 2026Updated last week
- Reproducible Self-Publishing - Demo Publications in the Most Common Formats☆14Nov 10, 2023Updated 2 years ago
- A python and C++ library for reading and writing neuronal morphologies☆28Feb 26, 2025Updated last year
- ImageJ Plugin for Flexible Atlas Segmentation Tool for Multi-Area Processing☆24Jul 4, 2022Updated 3 years ago