Generate a package-manager-friendly mouse brain atlases collection.
☆22Aug 4, 2023Updated 3 years ago
Alternatives and similar repositories for mouse-brain-templates
Users that are interested in mouse-brain-templates are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Small Animal Magnetic Resonance Imaging via Python.☆44Mar 4, 2024Updated 2 years ago
- Gentoo System and Image Builder☆11May 10, 2023Updated 3 years ago
- Atlas-based Imaging Data Analysis Pipeline (AIDA) for structural and functional MRI of the mouse brain☆37Updated this week
- Scripts to preprocess mouse MRI/fMRI/dMRI☆12May 22, 2024Updated 2 years ago
- A Python package to download neuronal morphologies☆17Aug 23, 2026Updated 2 weeks ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- A generally applicable whole-brain preprocessing toolbox for mice and rats☆14Jul 11, 2024Updated 2 years ago
- Multi-task U-Net for the simultaneous segmentation and skull-stripping of mouse brain MRI☆23Aug 20, 2021Updated 5 years ago
- Multi Atlas Segmentation and Morphometric analysis toolkit (MASMAT) for mouse brain MRI☆41Nov 28, 2025Updated 9 months ago
- General information, resources and dicussions for the BrainGlobe project.☆11Feb 21, 2025Updated last year
- Universal Renderer for Neuroscience☆16Nov 4, 2025Updated 10 months ago
- Build unbiased anatomical templates from individual images☆13Aug 23, 2026Updated 2 weeks ago
- atlasBREX: Automated averaged template-derived brain extraction in animal MRI☆18Jan 15, 2024Updated 2 years ago
- A GUI built on brainrender: visualise brain regions, neurons and labelled cells.☆12Nov 26, 2020Updated 5 years ago
- How to use Aligning Big Brains and Atlases with Python☆14May 3, 2023Updated 3 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- 2D image registration in python, using napari.☆16Dec 7, 2021Updated 4 years ago
- Derotate images acquired via multiphoton calcium imaging☆17Aug 3, 2026Updated last month
- Fancier logging with python.☆16Aug 28, 2026Updated last week
- Lab Book Database Framework with Input, Output, and Reporting Functions☆14Jul 18, 2022Updated 4 years ago
- Extremely accurate algorithm used to group DNA sequences from microbial communities into operational taxonomic units (proxy for species) …☆14Nov 20, 2018Updated 7 years ago
- ☆10Dec 18, 2017Updated 8 years ago
- Analysis code for Schmaelzle, O'Donnell et al. (2017) PNAS☆10May 7, 2017Updated 9 years ago
- ☆33Apr 8, 2026Updated 5 months ago
- A draft specification for the nifti-zarr format☆20Dec 5, 2025Updated 9 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- ☆20Apr 6, 2022Updated 4 years ago
- Medical image format converter: from raw Bruker ParaVision to nifti.☆32Dec 31, 2023Updated 2 years ago
- Source code of the Scalable Brain Atlas website (scalablebrainatlas.incf.org)☆15Mar 18, 2016Updated 10 years ago
- Python package providing mesoscale connectivity models for mouse.☆40Apr 3, 2024Updated 2 years ago
- Algorithms for calculating a zarr checksum against local or cloud storage☆13Feb 2, 2026Updated 7 months ago
- High-throughput Detection of Neurons for Brain-wide analysis with Deep Learning☆18Feb 21, 2022Updated 4 years ago
- A GUI and library for doing multi-fiber photometry☆19Oct 12, 2017Updated 8 years ago
- Mouse brain network analysis of rs-fMRI and DTI data using graph theory☆10Jan 16, 2026Updated 7 months ago
- Image registration (alignment) software for large microscopy images☆27Oct 15, 2023Updated 2 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- The ANTsX Ecosystem for Mapping the Mouse Brain☆24Dec 2, 2025Updated 9 months ago
- ☆18Feb 10, 2022Updated 4 years ago
- Multi-Template Mouse Brain MRI Atlas (MBMA): both in-vivo and ex-vivo☆28Jan 20, 2024Updated 2 years ago
- MagellanMapper is a graphical interface for 3D bioimage annotation, atlas registration, and regional quantification☆22Mar 30, 2026Updated 5 months ago
- Rendering anatomical heatmaps with brainrender and matplotlib☆52Aug 23, 2026Updated 2 weeks ago
- Tools for MRI mouse brain morphometry☆32Jan 16, 2017Updated 9 years ago
- ImageJ Plugin for Flexible Atlas Segmentation Tool for Multi-Area Processing☆23Jul 4, 2022Updated 4 years ago