Alternatives and similar repositories for mouse-brain-templates

Users that are interested in mouse-brain-templates are comparing it to the libraries listed below

• brainglobe / brainreg
  Automated 3D brain registration with support for multiple species and atlases.
  ☆136Updated 3 weeks ago
• brainglobe / slicereg
  A 2D-3D histological brain slice registration application for mouse, rat, zebrafish brains.
  ☆36Updated last year
• brainglobe / brainglobe-heatmap
  Rendering anatomical heatmaps with brainrender and matplotlib
  ☆44Updated 3 weeks ago
• bf777 / MesoNet
  A python toolbox for locating and exporting brain regions from mouse brain images.
  ☆12Updated 11 months ago
• lahammond / BrainJ
  Fiji pipeline for automated serial section reconstruction and mouse brain analysis.
  ☆29Updated last year
• kushalkolar / MESmerize
  Platform for Calcium Imaging analysis. DEPRECATED.
  ☆62Updated last year
• styx-api / niwrap
  Modern Neuroimaging Made Simple
  ☆21Updated 2 weeks ago
• ntustison / ANTsXMouseBrainMapping
  The ANTsX Ecosystem for Mapping the Mouse Brain
  ☆14Updated 3 weeks ago
• PrincetonUniversity / BrainPipe
  ☆18Updated 3 years ago
• PolarBean / DLC_ROI_tool
  A tool for drawing ROIs on videos and analysing deeplabcut videos.
  ☆33Updated 4 years ago
• Aswendt-Lab / AIDAmri
  Atlas-based Imaging Data Analysis Pipeline (AIDA) for structural and functional MRI of the mouse brain
  ☆31Updated last week
• grandjeanlab / MultiRat
  A Rat fMRI multi-center study
  ☆33Updated 3 years ago
• Whitlock-Group / HERBS
  ☆52Updated last year
• bkntr / brainways
  Brainways
  ☆21Updated 3 weeks ago
• bahanonu / ciatah
  CIAtah (pronounced cheetah): a software package for calcium imaging analysis of one- and two-photon imaging datasets. Documentation: http…
  ☆97Updated 10 months ago
• grandjeanlab / StandardRat
  A Rat fMRI standardized protocol
  ☆14Updated last year
• PRIME-RE / prime-re.github.io
  Open resource exchange platform for non-human primate neuroimaging
  ☆22Updated 5 months ago
• petersaj / AP_histology
  Histology processing
  ☆70Updated 2 weeks ago
• cookpa / antsInstallExample
  Simple bash script that downloads and installs ANTs in a unix environment
  ☆13Updated 7 months ago
• denisecailab / minian
  miniscope analysis pipeline with interactive visualizations
  ☆95Updated last year
• flatironinstitute / neurosift
  Browser-based NWB visualization and DANDI exploration
  ☆60Updated last week
• HelmchenLabSoftware / Cascade
  Calibrated inference of spiking from calcium ΔF/F data using deep networks
  ☆151Updated 3 weeks ago
• neurabenn / precon_all
  precon_all surface pipline
  ☆29Updated 4 months ago
• openlists / SpikeResources
  An open list of tools & resources for 'spikes': recordings of single-unit neural activity (action potentials).
  ☆31Updated 3 years ago
• neurospin / pypreclin
  ☆13Updated 5 years ago
• ChristophKirst / ClearMap
  ClearMap is a python toolbox for the analysis and registration of volumetric data from cleared tissues.
  ☆53Updated 5 years ago
• layerfMRI / LAYNII
  Stand alone fMRI software suite for layer-fMRI analyses.
  ☆102Updated 2 weeks ago
• itsasimiqbal / DeNeRD
  High-throughput Detection of Neurons for Brain-wide analysis with Deep Learning
  ☆17Updated 3 years ago
• brainglobe / brainglobe-segmentation
  Segmentation of anatomical structures in a common coordinate space
  ☆33Updated this week
• PRIME-RE / RheMAP
  Non-linear warps between common rhesus macaque brain templates
  ☆27Updated 3 months ago