RENCI / SegmentorLinks
3D segmention tool
☆13Updated 2 years ago
Alternatives and similar repositories for Segmentor
Users that are interested in Segmentor are comparing it to the libraries listed below
Sorting:
- Script that registers Histology slices to volumetric image data☆11Updated last year
- A napari plugin for itk-elastix☆38Updated last year
- Open-source, GPU accelerated code for deskewing and deconvolving lattice light sheet data☆25Updated 5 years ago
- 3D Extension of the Cellpose Algorithm by Stringer et al., 2021.☆35Updated 2 years ago
- Utils and convenience functions for large-scale bio-image analysis.☆57Updated last month
- Multilabel and Grey 3D morphological image processing functions. Dilate, Erode, Opening, Closing, Hole Filling.☆17Updated last month
- 3D shape analysis using deep learning☆24Updated last year
- C++ library and command-line software for processing and analysis of terabyte-scale volume images locally or on a computing cluster.☆55Updated 3 weeks ago
- Experimental code and examples for: Automated analysis of whole brain vasculature using machine learning☆73Updated 3 years ago
- Little OBjects Segmentation and Tracking EnviRonment☆9Updated 4 years ago
- 🔬🖥 Automated Blood Vasculature Analysis of 3D Light-Sheet Image Volumes☆49Updated last year
- ☆12Updated last year
- Distributed segmentation for bio-image-analysis☆38Updated 2 months ago
- Microscopy Image Browser version 2 is a package for image processing, segmentation and visualization of multi-dimensional (2D-4D) microsc…☆33Updated last month
- Process and analyze surfaces using vedo in napari.☆24Updated last year
- simple package for augmentation of n-dimensional arrays☆33Updated last year
- Intensify3D is an image normalization tool for large scale fluorescent imaging. It corrects heterogeneities in the signal (defined by the…☆19Updated 4 years ago
- AI-enabled Mouse Organ Segmentation☆13Updated 4 years ago
- Lattice light-sheet post-processing utility.☆29Updated last week
- Command line tool for registration of very large 3D volumes.☆14Updated last year
- ☆37Updated last year
- An open-source application for the analysis and visualization of segmented vasculature datasets☆117Updated last year
- ClearMap 2 with WobblyStitcher, TubeMap and CellMap☆120Updated last month
- Automated Segmentation of cellular substructures in Electron Microscopy☆17Updated 3 months ago
- Neuroclear is a deep-learning-based Python module to train a deep neural network for the task of applying super-resolution to degraded ax…☆30Updated 3 months ago
- ☆13Updated 5 months ago
- mcib3d core library for 3D ImageJ suite☆14Updated 2 years ago
- An ImageJ script to align and stitch three-dimensional tiles and quickly explore terabyte-sized microscopy datasets☆13Updated 3 years ago
- Accelerated Pixel and Object Classifiers (APOC)☆56Updated 5 months ago
- Matlab function to import ROIs from ImageJ