RENCI / SegmentorLinks
3D segmention tool
☆13Updated 2 years ago
Alternatives and similar repositories for Segmentor
Users that are interested in Segmentor are comparing it to the libraries listed below
Sorting:
- Script that registers Histology slices to volumetric image data☆11Updated 2 years ago
- A napari plugin for itk-elastix☆39Updated this week
- C++ library and command-line software for processing and analysis of terabyte-scale volume images locally or on a computing cluster.☆56Updated 4 months ago
- Open-source, GPU accelerated code for deskewing and deconvolving lattice light sheet data☆27Updated 5 years ago
- Experimental code and examples for: Automated analysis of whole brain vasculature using machine learning☆74Updated 4 years ago
- Microscopy Image Browser version 2 is a package for image processing, segmentation and visualization of multi-dimensional (2D-4D) microsc…☆35Updated last month
- Utils and convenience functions for large-scale bio-image analysis.☆58Updated 3 months ago
- Matlab function to import ROIs from ImageJ☆27Updated 5 years ago
- 🔬🖥 Automated Blood Vasculature Analysis of 3D Light-Sheet Image Volumes☆52Updated last year
- ☆38Updated last year
- A set of tools to assist in aligning (registering) large numbers of EM images into a coherent image volume in two and three dimensions.☆14Updated 6 years ago
- Robust 3D Neuron Tracing / General 3D tree structure extraction in Python for 3D images powered by the Rivulet2 algorithm. Pain-free Inst…☆71Updated 3 years ago
- Scalable Neuroglancer compatible Downsampling, Meshing, Skeletonizing, Contrast Normalization, Transfers and more.☆57Updated 3 weeks ago
- Multilabel and Grey 3D morphological image processing functions. Dilate, Erode, Opening, Closing, Hole Filling.☆19Updated 3 weeks ago
- Intensify3D is an image normalization tool for large scale fluorescent imaging. It corrects heterogeneities in the signal (defined by the…☆19Updated 4 years ago
- ☆40Updated last year
- www.vaa3d.org☆80Updated 7 years ago
- 3D Extension of the Cellpose Algorithm by Stringer et al., 2021.☆35Updated 3 years ago
- AI-enabled Mouse Organ Segmentation☆14Updated 4 years ago
- Command line tool for registration of very large 3D volumes.☆15Updated last year
- 2D image registration in python, using napari.☆16Updated 3 years ago
- 3D shape analysis using deep learning☆28Updated last month
- Easy Volumetric Segmentation with Deep Learning☆28Updated last week
- simple package for augmentation of n-dimensional arrays☆33Updated 2 years ago
- Archived: control, reconstruction, and analysis code for oblique plane microscopy.☆22Updated 7 months ago
- ☆10Updated last year
- Please go to https://github.com/CRBS/cdeep3m2 for most recent version☆59Updated 5 years ago
- Skeletonize densely labeled 3D image segmentations with TEASAR. (Medial Axis Transform)☆180Updated this week
- Lattice light-sheet post-processing utility.☆30Updated 2 weeks ago
- Image deconvolution algorithms in python☆24Updated 3 years ago