RENCI / SegmentorLinks
3D segmention tool
☆13Updated 2 years ago
Alternatives and similar repositories for Segmentor
Users that are interested in Segmentor are comparing it to the libraries listed below
Sorting:
- Script that registers Histology slices to volumetric image data☆11Updated last year
- Open-source, GPU accelerated code for deskewing and deconvolving lattice light sheet data☆25Updated 5 years ago
- A napari plugin for itk-elastix☆39Updated last year
- Little OBjects Segmentation and Tracking EnviRonment☆9Updated 5 years ago
- Microscopy Image Browser version 2 is a package for image processing, segmentation and visualization of multi-dimensional (2D-4D) microsc…☆34Updated 2 months ago
- Lattice light-sheet post-processing utility.☆29Updated this week
- An ImageJ script to align and stitch three-dimensional tiles and quickly explore terabyte-sized microscopy datasets☆13Updated 3 years ago
- C++ library and command-line software for processing and analysis of terabyte-scale volume images locally or on a computing cluster.☆55Updated last month
- ImgLib2/BDV implementation of Stitching for large datasets☆74Updated this week
- Experimental code and examples for: Automated analysis of whole brain vasculature using machine learning☆74Updated 3 years ago
- Utils and convenience functions for large-scale bio-image analysis.☆57Updated last week
- Neuroclear is a deep-learning-based Python module to train a deep neural network for the task of applying super-resolution to degraded ax…☆30Updated 4 months ago
- 3D shape analysis using deep learning☆25Updated last year
- 🔬🖥 Automated Blood Vasculature Analysis of 3D Light-Sheet Image Volumes☆51Updated last year
- ☆38Updated last year
- ClearMap 2 with WobblyStitcher, TubeMap and CellMap☆123Updated 2 weeks ago
- Matlab function to import ROIs from ImageJ☆27Updated 5 years ago
- MorphoFeatures code and data☆21Updated 2 years ago
- Archived: control, reconstruction, and analysis code for oblique plane microscopy.☆22Updated 4 months ago
- ZetaStitcher is a tool designed to stitch large volumetric images such as those produced by Light-Sheet Fluorescence Microscopes.☆44Updated last month
- 3D Structured illumination microscopy (3D-SIM) reconstruction software☆31Updated 10 months ago
- A BaSiC Tool for Background and Shading Correction of Optical Microscopy Images☆61Updated 4 months ago
- A deep-learning library for denoising images using Noise2Void and friends (CARE, PN2V, HDN etc.), with a focus on user-experience and doc…☆97Updated this week
- Intensify3D is an image normalization tool for large scale fluorescent imaging. It corrects heterogeneities in the signal (defined by the…☆19Updated 4 years ago
- Easy Volumetric Segmentation with Deep Learning☆26Updated 2 weeks ago
- Command line tool for registration of very large 3D volumes.☆14Updated last year
- Distributed segmentation for bio-image-analysis☆38Updated 2 months ago
- Multilabel and Grey 3D morphological image processing functions. Dilate, Erode, Opening, Closing, Hole Filling.☆18Updated last month
- AI-enabled Mouse Organ Segmentation☆13Updated 4 years ago
- A Python software library with a variety of functions for (optical) microscopy image restoration, reconstruction and analysis.☆80Updated 3 years ago