RENCI / Segmentor
3D segmention tool
☆13Updated last year
Related projects ⓘ
Alternatives and complementary repositories for Segmentor
- Script that registers Histology slices to volumetric image data☆11Updated last year
- A napari plugin for itk-elastix☆38Updated 5 months ago
- Very fast greedy diffeomorphic registration code☆67Updated last month
- 🔬🖥 Automated Blood Vasculature Analysis of 3D Light-Sheet Image Volumes☆40Updated 5 months ago
- C++ library and command-line software for processing and analysis of terabyte-scale volume images locally or on a computing cluster.☆50Updated 2 months ago
- Experimental code and examples for: Automated analysis of whole brain vasculature using machine learning☆63Updated 3 years ago
- INSPIRE: Intensity and Spatial Information-Based Deformable Image Registration☆11Updated 3 years ago
- simple package for augmentation of n-dimensional arrays☆32Updated last year
- Easy Volumetric Segmentation with Deep Learning☆22Updated 3 weeks ago
- Python-based Human-In-the-LOop Workflow: PHILOW is an interactive deep learning-based platform for 3D datasets☆26Updated 3 weeks ago
- MultiModal Big Image Data Sharing and Exploration☆14Updated last year
- 3D shape analysis using deep learning☆21Updated last year
- Automated Segmentation of cellular substructures in Electron Microscopy☆16Updated last week
- ☆11Updated 9 months ago
- 3D Extension of the Cellpose Algorithm by Stringer et al., 2021.☆31Updated 2 years ago
- ☆22Updated last month
- Neuroclear is a deep-learning-based Python module to train a deep neural network for the task of applying super-resolution to degraded ax…☆27Updated last month
- Panoptic segmentation algorithms for 2D and 3D electron microscopy images☆2Updated last year
- MorphoFeatures code and data☆18Updated last year
- Convolutional Neural Network-Based Instance Segmentation Algorithm to Acquire Quantitative Criteria of Early Mouse Development☆31Updated last year
- Utils and convenience functions for large-scale bio-image analysis.☆48Updated last month
- Python notebooks and data for learning about image registration. Hosted at a summer school☆9Updated 6 years ago
- ☆13Updated 2 years ago
- A plugin based on scikit-image for segmenting nuclei and cells based on fluorescent microscopy images with high intensity in nuclei and/o…☆23Updated this week
- Process and analyze surfaces using vedo in napari.☆22Updated 6 months ago
- Matlab function to import ROIs from ImageJ☆26Updated 4 years ago
- 2D image registration in python, using napari.☆16Updated 2 years ago
- Open-source, GPU accelerated code for deskewing and deconvolving lattice light sheet data☆23Updated 4 years ago
- Easily read and write ome-tiff images in python☆26Updated 6 months ago
- GPU-accelerated, OpenCL-based Random Forest Classifiers for pixel and labeled object classification in napari.☆43Updated last year