Viral (meta)-genome assembly pipeline.
☆23Jun 30, 2026Updated 2 weeks ago
Alternatives and similar repositories for vaper
Users that are interested in vaper are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Bacterial surveillance pipeline.☆28Jul 10, 2026Updated last week
- TaxTriage is a Nextflow workflow designed to agnostically identify and classify microbial organisms within short- or long-read metagenomi…☆78Updated this week
- Automated Pipeline to Generate FTP Files and Manage Submission of Sequence Data to Public Repositories☆40Feb 20, 2026Updated 5 months ago
- StxTyper uses a standardized algorithm to accurately type both known and unknown Shiga toxin operons from assembled genomic sequence.☆17Apr 22, 2026Updated 2 months ago
- Rapid identification of Staphylococcus aureus agr locus type and agr operon variants.☆13Jan 6, 2023Updated 3 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- ☆22Updated this week
- Scripts and reference files to type Group A Streptococcus☆11Apr 1, 2026Updated 3 months ago
- Opinionated viral metagenomics workflow☆16Updated this week
- ☆15Mar 12, 2026Updated 4 months ago
- A Nextflow pipeline for viral genomics (Influenza/RSV) supporting Illumina and Nanopore sequencing of clinical and wastewater samples.☆10Jun 9, 2026Updated last month
- An open-source pathogen sequence database dedicated to equitable sharing, transparent governance, & empowering global public health.☆57Updated this week
- A repo with just adapter sequences☆15Jul 7, 2025Updated last year
- NCBI Pathogen Detection Portal toolkit☆11Sep 6, 2023Updated 2 years ago
- Assembly of Nanopore Sequencing☆17May 21, 2026Updated last month
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Bioinformatics workflows for genomic characterization, submission preparation, and genomic epidemiology of pathogens of public health con…☆63Updated this week
- QC cutoffs for different genomes.☆17May 28, 2026Updated last month
- ☆26Updated this week
- ☆18Updated this week
- IRMA (the Iterative Refinement Meta-Assembler) is a highly configurable and adaptive tool for virus genome assembly.☆28Jul 6, 2026Updated 2 weeks ago
- A rapid, accurate and flexible (core-genome) multi-locus sequence typing (MLST) allele caller.☆32Updated this week
- ☆33Updated this week
- A user-friendly tool to screen antimicrobial resistance in fungal genomes☆20May 8, 2026Updated 2 months ago
- Ultra-rapid detection of viral variants directly from sequencing data☆46Updated this week
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Consensus sequences for U.S. H5N1 clade 2.3.4.4b☆38Updated this week
- Nextflow workflows to assign Salmonella serotype based on Genome similarity using MASH, SOURMASH and KMA.☆13Jul 2, 2026Updated 2 weeks ago
- A simple nextflow pipeline for running kraken2 and bracken in a docker container☆21Oct 8, 2025Updated 9 months ago
- A methodology to rapidly leverage whole genome sequencing of bacterial isolates for clinical identification.☆35Jul 11, 2026Updated last week
- Influenza data pipeline to automate genotyping assignment☆44Mar 19, 2026Updated 4 months ago
- Genome browser 🧬👀🚀☆34Jun 14, 2026Updated last month
- A Python package to update the MLST database for the mlst tool.☆28May 27, 2026Updated last month
- emm Automatic Isolate Labeller☆15Mar 25, 2025Updated last year
- Reference-based consensus creation☆61Updated this week
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Influenza genome analysis Nextflow workflow☆27Jun 3, 2026Updated last month
- Repo for PrimerSchemes☆17Jul 6, 2026Updated 2 weeks ago
- µbinfie blog☆19Jul 21, 2025Updated last year
- Script that labels phylogenetic clades based on the clade of the nearest neighbor using patristic distances determined from the tree.☆15Dec 11, 2024Updated last year
- Dryad is a Nextflow pipeline for examining prokaryote relatedness. Dryad can perform a reference free analysis and/or SNP analysis.☆20Mar 25, 2026Updated 3 months ago
- Software for the Tree-Based Scan Statistic☆17Jul 8, 2026Updated last week
- Course materials for an introduction to SARS-CoV-2 sequencing data analysis☆14Aug 15, 2024Updated last year