Viral (meta)-genome assembly pipeline.
☆23Apr 3, 2026Updated this week
Alternatives and similar repositories for vaper
Users that are interested in vaper are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Bacterial surveillance pipeline.☆27Dec 30, 2025Updated 3 months ago
- Automated Pipeline to Generate FTP Files and Manage Submission of Sequence Data to Public Repositories☆39Feb 20, 2026Updated last month
- Opinionated viral metagenomics workflow☆13Mar 30, 2026Updated last week
- TaxTriage is a Nextflow workflow designed to agnostically identify and classify microbial organisms within short- or long-read metagenomi…☆66Updated this week
- Repo for PrimerSchemes☆17Mar 31, 2026Updated last week
- Wordpress hosting with auto-scaling on Cloudways • AdFully Managed hosting built for WordPress-powered businesses that need reliable, auto-scalable hosting. Cloudways SafeUpdates now available.
- NCBI Pathogen Detection Portal toolkit☆11Sep 6, 2023Updated 2 years ago
- Bioinformatics workflows for genomic characterization, submission preparation, and genomic epidemiology of pathogens of public health con…☆61Updated this week
- Consensus sequences for U.S. H5N1 clade 2.3.4.4b☆37Updated this week
- StxTyper uses a standardized algorithm to accurately type both known and unknown Shiga toxin operons from assembled genomic sequence.☆16Dec 9, 2025Updated 4 months ago
- A user-friendly tool to screen antimicrobial resistance in fungal genomes☆18Aug 29, 2025Updated 7 months ago
- Utility to alias and dealias pango lineages☆23Dec 18, 2023Updated 2 years ago
- ☆24Updated this week
- ☆18Apr 2, 2026Updated last week
- emm Automatic Isolate Labeller☆12Mar 25, 2025Updated last year
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Dryad is a Nextflow pipeline for examining prokaryote relatedness. Dryad can perform a reference free analysis and/or SNP analysis.☆19Mar 25, 2026Updated 2 weeks ago
- 🧬 💻 TOSTADAS → Toolkit for Open Sequence Triage, Annotation and DAtabase Submission☆29Mar 10, 2026Updated last month
- Collection template and associated materials for SARS-CoV-2 metadata☆37Oct 27, 2023Updated 2 years ago
- An open-source pathogen sequence database dedicated to equitable sharing, transparent governance, & empowering global public health.☆53Updated this week
- A Nextflow pipeline for viral genomics (Influenza/RSV) supporting Illumina and Nanopore sequencing of clinical and wastewater samples.☆10Feb 27, 2026Updated last month
- Influenza data pipeline to automate genotyping assignment☆41Mar 19, 2026Updated 3 weeks ago
- Programmatically interact with the GISAID database.☆80Aug 5, 2025Updated 8 months ago
- Informal summaries of notable SARS-CoV-2 lineages☆111Aug 22, 2025Updated 7 months ago
- Software for the Tree-Based Scan Statistic☆14Updated this week
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- A methodology to rapidly leverage whole genome sequencing of bacterial isolates for clinical identification.☆35Dec 2, 2024Updated last year
- SARS-Cov-2 Recombinant Finder for fasta sequences☆50Jun 22, 2022Updated 3 years ago
- interactive barplot for amplicon sequencing☆13Dec 5, 2024Updated last year
- app to collapse Pango lineages for reporting☆13Dec 9, 2025Updated 4 months ago
- ☆25Jun 25, 2024Updated last year
- Template for building your own portfolio☆27Jul 2, 2025Updated 9 months ago
- Ampseer examines reads in fastq format and identifies which multiplex PCR primer set was used to generate the SARS-CoV-2 sequencing libra…☆15Feb 27, 2024Updated 2 years ago
- RSV-A lineage definitions and proposals☆14Nov 9, 2025Updated 5 months ago
- ☆21Feb 12, 2026Updated last month
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- Java software to analyse phylogeny-trait correlations in discrete traits, accounting for phylogenetic uncertainty via posterior sampling.☆12Sep 26, 2017Updated 8 years ago
- mytax is a tool for building custom taxonomies, useful for nucleotide sequence classification☆13Oct 9, 2025Updated 6 months ago
- EDGE is a highly adaptable bioinformatics platform that allows laboratories to quickly analyze and interpret genomic sequence data.☆78Mar 19, 2026Updated 3 weeks ago
- Fast and space-efficient taxonomic classification of long reads☆45Aug 25, 2025Updated 7 months ago
- SARs-CoV-2 Primer schemes☆16May 14, 2025Updated 10 months ago
- Predict MLST directly from uncorrected long reads☆27Oct 31, 2025Updated 5 months ago
- Workflow for viral analysis guided by reference☆18Feb 19, 2026Updated last month