Alternatives and similar repositories for MEDIAR

Users that are interested in MEDIAR are comparing it to the libraries listed below

• FZJ-INM1-BDA / celldetection
  Scalable Instance Segmentation using PyTorch & PyTorch Lightning.
  ☆145Updated 7 months ago
• okunator / cellseg_models.pytorch
  Encoder-Decoder Cell and Nuclei segmentation models
  ☆95Updated last month
• sartorius-research / LIVECell
  ☆204Updated 2 years ago
• sebastianffx / stainlib
  Python 3 library for the augmentation & normalization of H&E images
  ☆62Updated 3 years ago
• PathologyDataScience / NuCLS
  NuCLS: A scalable crowdsourcing, deep learning approach and dataset for nucleus classification, localization and segmentation
  ☆55Updated 3 years ago
• juglab / EmbedSeg
  Code Implementation for EmbedSeg, an Instance Segmentation Method for Microscopy Images
  ☆126Updated last year
• vanvalenlab / cellSAM
  Codebase for "A Foundation Model for Cell Segmentation"
  ☆142Updated last month
• EIDOSLAB / torchstain
  Stain normalization tools for histological analysis and computational pathology
  ☆164Updated last month
• digitalpathologybern / hover_next_train
  Training/Evaluation code for HoVer-NeXt
  ☆15Updated last month
• sophiajw / HistAuGAN
  ☆43Updated 3 years ago
• ASHISRAVINDRAN / stardist_pytorch
  StarDist PyTorch
  ☆47Updated 3 years ago
• kevindehaan / stain-transformation
  ☆46Updated 3 years ago
• HistAI / hibou
  Hibou: Foundational Models for Pathology
  ☆75Updated last year
• TIO-IKIM / CellViT
  CellViT: Vision Transformers for Precise Cell Segmentation and Classification
  ☆350Updated 4 months ago
• manuel-munoz-aguirre / PyHIST
  A pipeline to segment tissue from the background in histological images
  ☆71Updated 2 years ago
• constantinpape / torch-em
  Deep-learning based semantic and instance segmentation for 3D Electron Microscopy and other bioimage analysis problems based on pytorch.
  ☆111Updated this week
• masih4 / NuInsSeg
  NuInsSeg: A Fully Annotated Dataset for Nuclei Instance Segmentation in H&E-Stained Histological Images
  ☆37Updated last year
• lunit-io / benchmark-ssl-pathology
  Official repository of Benchmarking Self-Supervised Learning on Diverse Pathology Datasets
  ☆91Updated 2 years ago
• digitalpathologybern / hover_next_inference
  Inference code for HoVer-NeXt
  ☆42Updated last month
• navidstuv / NuClick
  Interactive Segmentation of Nucleus
  ☆66Updated 3 years ago
• mahmoodlab / SISH
  Fast and scalable search of whole-slide images via self-supervised deep learning - Nature Biomedical Engineering
  ☆108Updated 2 years ago
• khtao / StainNet
  StainNet: a fast and robust stain normalization network
  ☆51Updated 4 years ago
• MathOnco / valis
  Virtual Alignment of pathoLogy Image Series
  ☆195Updated 5 months ago
• MIC-DKFZ / napari-sam
  Segment anything with our Napari integration of Meta AI's Segment Anything Model (SAM)!
  ☆242Updated last year
• nadeemlab / DeepLIIF
  Deep Learning Inferred Multiplex ImmunoFluorescence for IHC Image Quantification (https://deepliif.org) [Nature Machine Intelligence'22, …
  ☆228Updated this week
• Nellaker-group / happy
  ☆24Updated 2 months ago
• stanfordmlgroup / DLBCL-Morph
  DLBCL-Morph dataset containing high resolution tissue microarray scans from 209 DLBCL cases, with geometric features computed using deep …
  ☆38Updated 4 years ago
• aetherAI / whole-slide-cnn
  This repository provides scripts to reproduce the results in the paper "An annotation-free whole-slide training approach to pathological …
  ☆64Updated 4 years ago
• TissueImageAnalytics / cerberus
  One Model is All You Need: Multi-Task Learning Enables Simultaneous Histology Image Segmentation and Classification
  ☆99Updated last year
• Richarizardd / Self-Supervised-ViT-Path
  Self-Supervised Vision Transformers Learn Visual Concepts in Histopathology (LMRL Workshop, NeurIPS 2021)
  ☆142Updated 3 years ago