Convolutional Neural Network-Based Instance Segmentation Algorithm to Acquire Quantitative Criteria of Early Mouse Development
☆33May 3, 2023Updated 3 years ago
Alternatives and similar repositories for QCANet
Users that are interested in QCANet are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆31Apr 13, 2021Updated 5 years ago
- Dataset EXploration & Processing☆33May 11, 2023Updated 3 years ago
- ☆18May 5, 2023Updated 3 years ago
- ☆15Jul 29, 2022Updated 3 years ago
- A napari plugin for direct 3D cell segmentation -- taking you through training, inference, and review of masks☆120Updated this week
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Rust extension module for FIJI-like colormapping and channel blending☆21Mar 31, 2026Updated last month
- General Image Analysis of Nuclei-containing Images☆10Jul 11, 2025Updated 10 months ago
- Use Napari Viewer to display CZI images☆11May 25, 2022Updated 4 years ago
- Python program to generate NetworkX graphs from segmented images.☆14Apr 14, 2023Updated 3 years ago
- ☆24Aug 27, 2020Updated 5 years ago
- Neuroclear is a deep-learning-based Python module to train a deep neural network for the task of applying super-resolution to degraded ax…☆36Mar 21, 2025Updated last year
- 3D segmentation for cells and organoids of 3D multichannel images☆32Jun 24, 2025Updated 11 months ago
- Python package to export tensorflow models as DeepImageJ bundled models☆17Aug 10, 2022Updated 3 years ago
- This repository provides a collection of tools to simplify reading CZI (Carl Zeiss Image) pixel and metadata in Python.☆22Updated this week
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- The code of SRIBD-Med Team for NeurIPS2022 Cell Segmentation Challenge☆15Jul 23, 2023Updated 2 years ago
- Open-source volumetric brain vasculature dataset — 12 two-photon microscopy stacks with dense voxel-level segmentation labels☆17Feb 16, 2026Updated 3 months ago
- This repository contains the codes to run the nuclei segmentation pipeline of the BIOMAG group inspired by Kaggle's Data Science Bowl 201…☆55Sep 14, 2020Updated 5 years ago
- Optimize image processing workflows in napari☆17May 1, 2025Updated last year
- A short course exploring several fun and useful notebooks and Napari widgets for deep learning with SAM, Cellpose, Stardist and friends.☆19Dec 9, 2025Updated 5 months ago
- Three-dimensional propagation and time-reversal of fluorescence images☆40Mar 25, 2019Updated 7 years ago
- Code Implementation for EmbedSeg, an Instance Segmentation Method for Microscopy Images☆126Feb 14, 2024Updated 2 years ago
- A tool for cell instance aware segmentation in densely packed 3D volumetric images☆125May 15, 2026Updated last week
- Guides and code for 3D nuclear instance segmentation☆23Dec 2, 2025Updated 5 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- computer vision models for single-cell phenotyping☆93Updated this week
- Please go to https://github.com/CRBS/cdeep3m2 for most recent version☆59Feb 9, 2020Updated 6 years ago
- Padlock design pipeline for multiplexed assay with multiple probes per target in cDNA-based expression profiling☆15Jul 11, 2024Updated last year
- ZeroCostDL4Mic: A Google Colab based no-cost toolbox to explore Deep-Learning in Microscopy☆642Mar 29, 2026Updated last month
- AICS Segmentation (One-Way) Mirror☆45Dec 16, 2020Updated 5 years ago
- ☆27Jun 17, 2025Updated 11 months ago
- A python algorithm for tracking cells in 3D deforming organs☆69Nov 13, 2025Updated 6 months ago
- 3D shape analysis using deep learning☆31Oct 8, 2025Updated 7 months ago
- A Beginner's guide to microscopy, from sample prep to acquisition, image analysis, and data interpretation☆29Apr 11, 2026Updated last month
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Segment Deep Gray Matter on QSM images using 3D CNN☆19Sep 24, 2018Updated 7 years ago
- Saliency calculation module for Chainer☆12May 28, 2019Updated 6 years ago
- A modular framework for image processing and analysis, aimed at the biological sciences☆13Oct 16, 2013Updated 12 years ago
- Useful classes and functions implementation for Chainer (the deep learning framework)☆11Mar 1, 2019Updated 7 years ago
- A deep learning model for single cell segmentation from microsopy images.☆36Updated this week
- Multi-Instance-Learning to check breast cancer. An implementation of Patch-based Convolutional Neural Network for Whole Slide Tissue Imag…☆51Jan 29, 2018Updated 8 years ago
- Official implementation of the paper: Narotamo, H., Silveira, M., & Franco, C. A. (2024). 3DVascNet: An Automated Software for Segmentati…☆12Jan 21, 2025Updated last year