Alternatives and similar repositories for skan

Users that are interested in skan are comparing it to the libraries listed below

• seung-lab / kimimaro
  Skeletonize densely labeled 3D image segmentations with TEASAR. (Medial Axis Transform)
  ☆157Updated 2 weeks ago
• Image-Py / sknw
  build net work from skeleton image (2D-3D)
  ☆240Updated 3 years ago
• constantinpape / elf
  Utils and convenience functions for large-scale bio-image analysis.
  ☆56Updated last week
• RivuletStudio / rivuletpy
  Robust 3D Neuron Tracing / General 3D tree structure extraction in Python for 3D images powered by the Rivulet2 algorithm. Pain-free Inst…
  ☆68Updated 2 years ago
• urakubo / UNI-EM
  A unified environment for DNN-based automated segmentation of neuronal EM images
  ☆37Updated 9 months ago
• funalab / QCANet
  Convolutional Neural Network-Based Instance Segmentation Algorithm to Acquire Quantitative Criteria of Early Mouse Development
  ☆31Updated 2 years ago
• almarklein / pyelastix
  Thin wrapper around elastix - a toolbox for rigid and nonrigid registration of images
  ☆107Updated 5 years ago
• seung-lab / fastmorph
  Multilabel and Grey 3D morphological image processing functions. Dilate, Erode, Opening, Closing, Hole Filling.
  ☆17Updated last week
• constantinpape / cluster_tools
  Distributed segmentation for bio-image-analysis
  ☆38Updated last month
• MIDA-group / globalign
  Fast global mutual information-based rigid alignment in the Fourier domain
  ☆32Updated 10 months ago
• SuperElastix / elastix-napari
  A napari plugin for itk-elastix
  ☆38Updated last year
• arttumiettinen / pi2
  C++ library and command-line software for processing and analysis of terabyte-scale volume images locally or on a computing cluster.
  ☆55Updated 2 weeks ago
• sciai-lab / mutex-watershed
  The mutex watershed for image segmentation.
  ☆67Updated 4 years ago
• seung-lab / euclidean-distance-transform-3d
  Euclidean distance & signed distance transform for multi-label 3D anisotropic images using marching parabolas.
  ☆250Updated 3 months ago
• mhe / pynrrd
  Simple pure-python module for reading and writing nrrd files.
  ☆122Updated 5 months ago
• CRBS / cdeep3m
  Please go to https://github.com/CRBS/cdeep3m2 for most recent version
  ☆59Updated 5 years ago
• RUB-Bioinf / VesselExpress
  🔬🖥 Automated Blood Vasculature Analysis of 3D Light-Sheet Image Volumes
  ☆47Updated last year
• knossos-project / knossos
  KNOSSOS is a software tool for the visualization and annotation of 3D image data and was developed for the rapid reconstruction of neural…
  ☆75Updated last month
• tix209 / SOAX
  2D/3D biopolymer network extraction and quantification.
  ☆16Updated 2 years ago
• uncbiag / mermaid
  Image registration using pytorch
  ☆182Updated 11 months ago
• JacobBumgarner / VesselVio
  An open-source application for the analysis and visualization of segmented vasculature datasets
  ☆115Updated last year
• SuperElastix / SuperElastix
  Official SuperElastix repository
  ☆87Updated 6 years ago
• 3Scan / 3scan-skeleton
  3D Image Skeletonization Tools
  ☆37Updated last year
• cgohlke / roifile
  Read and write ImageJ ROI format.
  ☆72Updated last month
• glichtner / pystackreg
  A python extension for the automatic alignment of a source image or a stack (movie) to a target image/reference frame.
  ☆89Updated 8 months ago
• uhlmanngroup / muMatch
  Pipeline for putting surface meshes into correspondence
  ☆26Updated 2 years ago
• seung-lab / connected-components-3d
  Connected components on discrete and continuous multilabel 3D & 2D images. Handles 26, 18, and 6 connected variants; periodic boundaries …
  ☆418Updated last week
• hadim / read-roi
  Read ROI files .zip or .roi generated with ImageJ.
  ☆53Updated 3 years ago
• clEsperanto / pyclesperanto_prototype
  GPU-accelerated bio-image analysis focusing on 3D+t microscopy image data
  ☆230Updated 4 months ago
• funkelab / gunpowder
  A library to facilitate machine learning on multi-dimensional images.
  ☆82Updated 3 weeks ago