Alternatives and similar repositories for skan:

Users that are interested in skan are comparing it to the libraries listed below

• seung-lab / kimimaro
  Skeletonize densely labeled 3D image segmentations with TEASAR. (Medial Axis Transform)
  ☆145Updated last week
• Image-Py / sknw
  build net work from skeleton image (2D-3D)
  ☆230Updated 2 years ago
• almarklein / pyelastix
  Thin wrapper around elastix - a toolbox for rigid and nonrigid registration of images
  ☆106Updated 4 years ago
• pyimreg / pyimreg.github.com
  A curated list of Python projects for non-rigid (i.e. elastic) image registration
  ☆31Updated 8 months ago
• mhe / pynrrd
  Simple pure-python module for reading and writing nrrd files.
  ☆119Updated last month
• BiaPyX / BiaPy
  Open source Python library for building bioimage analysis pipelines
  ☆137Updated this week
• RivuletStudio / rivuletpy
  Robust 3D Neuron Tracing / General 3D tree structure extraction in Python for 3D images powered by the Rivulet2 algorithm. Pain-free Inst…
  ☆67Updated 2 years ago
• JacobBumgarner / VesselVio
  An open-source application for the analysis and visualization of segmented vasculature datasets
  ☆108Updated 9 months ago
• funalab / QCANet
  Convolutional Neural Network-Based Instance Segmentation Algorithm to Acquire Quantitative Criteria of Early Mouse Development
  ☆31Updated last year
• glichtner / pystackreg
  A python extension for the automatic alignment of a source image or a stack (movie) to a target image/reference frame.
  ☆86Updated 4 months ago
• seung-lab / fastmorph
  Multilabel and Grey 3D morphological image processing functions. Dilate, Erode, Opening, Closing, Hole Filling.
  ☆13Updated last week
• arttumiettinen / pi2
  C++ library and command-line software for processing and analysis of terabyte-scale volume images locally or on a computing cluster.
  ☆54Updated last week
• constantinpape / elf
  Utils and convenience functions for large-scale bio-image analysis.
  ☆53Updated last month
• clEsperanto / pyclesperanto_prototype
  GPU-accelerated bio-image analysis focusing on 3D+t microscopy image data
  ☆220Updated 2 weeks ago
• hadim / read-roi
  Read ROI files .zip or .roi generated with ImageJ.
  ☆53Updated 2 years ago
• seung-lab / igneous
  Scalable Neuroglancer compatible Downsampling, Meshing, Skeletonizing, Contrast Normalization, Transfers and more.
  ☆47Updated this week
• 3Scan / 3scan-skeleton
  3D Image Skeletonization Tools
  ☆35Updated last year
• SuperElastix / SuperElastix
  Official SuperElastix repository
  ☆86Updated 5 years ago
• constantinpape / cluster_tools
  Distributed segmentation for bio-image-analysis
  ☆36Updated 8 months ago
• SuperElastix / elastix-napari
  A napari plugin for itk-elastix
  ☆38Updated 9 months ago
• m-albert / MVRegFus
  Python module for registering and fusing multi-view microscopy data
  ☆23Updated this week
• CRBS / cdeep3m
  Please go to https://github.com/CRBS/cdeep3m2 for most recent version
  ☆59Updated 5 years ago
• funkelab / gunpowder
  A library to facilitate machine learning on multi-dimensional images.
  ☆81Updated this week
• aschampion / diluvian
  Flood filling networks for segmenting electron microscopy of neural tissue
  ☆23Updated 2 years ago
• BioMedIA / python-irtk
  Cython based wrapper for IRTK
  ☆10Updated 9 years ago
• cgohlke / roifile
  Read and write ImageJ ROI format.
  ☆71Updated 2 weeks ago
• seung-lab / euclidean-distance-transform-3d
  Euclidean distance & signed distance transform for multi-label 3D anisotropic images using marching parabolas.
  ☆249Updated last week
• RUB-Bioinf / VesselExpress
  🔬🖥 Automated Blood Vasculature Analysis of 3D Light-Sheet Image Volumes
  ☆47Updated 9 months ago
• sciai-lab / mutex-watershed
  The mutex watershed for image segmentation.
  ☆67Updated 3 years ago
• uncbiag / mermaid
  Image registration using pytorch
  ☆179Updated 7 months ago