jni / skanLinks
Python module to analyse skeleton (thin object) images
☆137Updated last month
Alternatives and similar repositories for skan
Users that are interested in skan are comparing it to the libraries listed below
Sorting:
- Skeletonize densely labeled 3D image segmentations with TEASAR. (Medial Axis Transform)☆174Updated last week
- build net work from skeleton image (2D-3D)☆246Updated 3 years ago
- A unified environment for DNN-based automated segmentation of neuronal EM images☆37Updated last year
- Flood filling networks for segmenting electron microscopy of neural tissue☆23Updated 2 years ago
- A python extension for the automatic alignment of a source image or a stack (movie) to a target image/reference frame.☆91Updated last year
- C++ library and command-line software for processing and analysis of terabyte-scale volume images locally or on a computing cluster.☆56Updated 4 months ago
- Robust 3D Neuron Tracing / General 3D tree structure extraction in Python for 3D images powered by the Rivulet2 algorithm. Pain-free Inst…☆71Updated 2 years ago
- Scalable Neuroglancer compatible Downsampling, Meshing, Skeletonizing, Contrast Normalization, Transfers and more.☆55Updated last week
- Convolutional Neural Network-Based Instance Segmentation Algorithm to Acquire Quantitative Criteria of Early Mouse Development☆32Updated 2 years ago
- Euclidean distance & signed distance transform for multi-label 3D anisotropic images using marching parabolas.☆257Updated last week
- Fast global mutual information-based rigid alignment in the Fourier domain☆32Updated last year
- Utils and convenience functions for large-scale bio-image analysis.☆58Updated 3 months ago
- Please go to https://github.com/CRBS/cdeep3m2 for most recent version☆59Updated 5 years ago
- The Biomedical Image Segmentation App is a free and open-source application for segmenting 3D images such as CT and MRI scans, developed …☆54Updated last month
- Fill holes in binary 2D & 3D images fast.☆28Updated last month
- The mutex watershed for image segmentation.☆67Updated 4 years ago
- Multilabel and Grey 3D morphological image processing functions. Dilate, Erode, Opening, Closing, Hole Filling.☆19Updated last week
- Thin wrapper around elastix - a toolbox for rigid and nonrigid registration of images☆110Updated 5 years ago
- Simple pure-python module for reading and writing nrrd files.☆122Updated 9 months ago
- A curated list of Python projects for non-rigid (i.e. elastic) image registration☆32Updated last year
- Read ROI files .zip or .roi generated with ImageJ.☆53Updated 3 years ago
- Distributed segmentation for bio-image-analysis☆39Updated 5 months ago
- Remap, mask, renumber, unique, and in-place transposition of 3D labeled images. Point cloud too.☆63Updated last month
- Connected components on discrete and continuous multilabel 3D & 2D images. Handles 26, 18, and 6 connected variants; periodic boundaries …☆428Updated 2 weeks ago
- A library to facilitate machine learning on multi-dimensional images.☆86Updated 3 weeks ago
- GPU-accelerated bio-image analysis focusing on 3D+t microscopy image data☆232Updated 8 months ago
- A napari plugin for itk-elastix☆39Updated last week
- An open-source application for the analysis and visualization of segmented vasculature datasets☆123Updated last year
- Kaibu -- a progressive web app for visualizing and annotating multi-dimensional images.☆35Updated 6 months ago
- Python module for registering and fusing multi-view microscopy data☆23Updated 7 months ago