Alternatives and similar repositories for skan:

Users that are interested in skan are comparing it to the libraries listed below

• seung-lab / kimimaro
  Skeletonize densely labeled 3D image segmentations with TEASAR. (Medial Axis Transform)
  ☆145Updated 3 weeks ago
• almarklein / pyelastix
  Thin wrapper around elastix - a toolbox for rigid and nonrigid registration of images
  ☆104Updated 4 years ago
• Image-Py / sknw
  build net work from skeleton image (2D-3D)
  ☆230Updated 2 years ago
• funalab / QCANet
  Convolutional Neural Network-Based Instance Segmentation Algorithm to Acquire Quantitative Criteria of Early Mouse Development
  ☆31Updated last year
• BiaPyX / BiaPy
  Open source Python library for building bioimage analysis pipelines
  ☆136Updated this week
• hadim / read-roi
  Read ROI files .zip or .roi generated with ImageJ.
  ☆51Updated 2 years ago
• CRBS / cdeep3m
  Please go to https://github.com/CRBS/cdeep3m2 for most recent version
  ☆59Updated 5 years ago
• RivuletStudio / rivuletpy
  Robust 3D Neuron Tracing / General 3D tree structure extraction in Python for 3D images powered by the Rivulet2 algorithm. Pain-free Inst…
  ☆66Updated 2 years ago
• mhe / pynrrd
  Simple pure-python module for reading and writing nrrd files.
  ☆119Updated 3 weeks ago
• RUB-Bioinf / VesselExpress
  🔬🖥 Automated Blood Vasculature Analysis of 3D Light-Sheet Image Volumes
  ☆44Updated 8 months ago
• arttumiettinen / pi2
  C++ library and command-line software for processing and analysis of terabyte-scale volume images locally or on a computing cluster.
  ☆54Updated 3 weeks ago
• funkelab / gunpowder
  A library to facilitate machine learning on multi-dimensional images.
  ☆81Updated 2 months ago
• m-albert / MVRegFus
  Python module for registering and fusing multi-view microscopy data
  ☆23Updated last year
• InsightSoftwareConsortium / ITKElastix
  An ITK Python interface to elastix, a toolbox for rigid and nonrigid registration of images
  ☆223Updated last week
• CAREamics / careamics
  A deep-learning library for denoising images using Noise2Void and friends (CARE, PN2V, HDN etc.), with a focus on user-experience and doc…
  ☆55Updated this week
• sciai-lab / mutex-watershed
  The mutex watershed for image segmentation.
  ☆64Updated 3 years ago
• 3Scan / 3scan-skeleton
  3D Image Skeletonization Tools
  ☆35Updated last year
• JacobBumgarner / VesselVio
  An open-source application for the analysis and visualization of segmented vasculature datasets
  ☆104Updated 9 months ago
• cremi / cremi_python
  Python scripts to read and write the CREMI hdf5 file format.
  ☆38Updated last year
• SuperElastix / elastix-napari
  A napari plugin for itk-elastix
  ☆38Updated 8 months ago
• clEsperanto / pyclesperanto_prototype
  GPU-accelerated bio-image analysis focusing on 3D+t microscopy image data
  ☆217Updated 4 months ago
• SuperElastix / SuperElastix
  Official SuperElastix repository
  ☆85Updated 5 years ago
• vessap / vessap
  Experimental code and examples for: Automated analysis of whole brain vasculature using machine learning
  ☆65Updated 3 years ago
• cgohlke / roifile
  Read and write ImageJ ROI format.
  ☆68Updated 5 months ago
• JaneliaSciComp / bigstream
  Tools for distributed alignment of massive images
  ☆80Updated this week
• constantinpape / elf
  Utils and convenience functions for large-scale bio-image analysis.
  ☆51Updated last week
• constantinpape / cluster_tools
  Distributed segmentation for bio-image-analysis
  ☆36Updated 7 months ago
• WenChentao / 3DeeCellTracker
  A python algorithm for tracking cells in 3D time lapse images.
  ☆55Updated last month
• MIDA-group / globalign
  Fast global mutual information-based rigid alignment in the Fourier domain
  ☆29Updated 6 months ago
• apeer-micro / apeer-ometiff-library
  Easily read and write ome-tiff images in python
  ☆26Updated 9 months ago