Alternatives and similar repositories for napari-sam

Users that are interested in napari-sam are comparing it to the libraries listed below

• frankkramer-lab / miseval
  a metric library for Medical Image Segmentation EVALuation
  ☆119Updated last year
• arcadelab / FastSAM3D
  Code for "FastSAM3D: An Efficient Segment Anything Model for 3D Volumetric Medical Images"
  ☆104Updated 9 months ago
• bwittmann / transoar
  A 3D medical Detection Transformer library. Papers accepted @ MIDL22 & MELBA23/02.
  ☆71Updated last year
• UARK-AICV / SAM3D
  [ISBI 2024] An implementation of SAM3D which adapts Segment Anything Model for Volumetric Medical Image Segmentation
  ☆82Updated last year
• mazurowski-lab / segment-anything-medical-evaluation
  Code for "Segment Anything Model for Medical Image Analysis: an Experimental Study" in Medical Image Analysis
  ☆169Updated last year
• constantinpape / torch-em
  Deep-learning based semantic and instance segmentation for 3D Electron Microscopy and other bioimage analysis problems based on pytorch.
  ☆111Updated last week
• bingogome / samm
  A 3D Slicer integration to Meta's SAM.
  ☆250Updated last year
• halleewong / ScribblePrompt
  [ECCV 2024] ScribblePrompt: Fast and Flexible Interactive Segmentation for Any Medical Image
  ☆204Updated 5 months ago
• MIC-DKFZ / napari-nninteractive
  nnInteractive plugin for Napari - nnInteractive is a framework for 3D interactive segmentation, supporting intuitive prompts like points,…
  ☆103Updated 2 months ago
• MIC-DKFZ / nnInteractive
  nnInteractive is a framework for 3D interactive segmentation, supporting intuitive prompts like points, scribbles, bounding boxes, and la…
  ☆338Updated last month
• Project-MONAI / VISTA
  MONAI Versatile Imaging Segmentation and Annotation
  ☆259Updated 2 months ago
• MIC-DKFZ / Skeleton-Recall
  Skeleton Recall Loss for Connectivity Conserving and Resource Efficient Segmentation of Thin Tubular Structures
  ☆120Updated 3 weeks ago
• FZJ-INM1-BDA / celldetection
  Scalable Instance Segmentation using PyTorch & PyTorch Lightning.
  ☆145Updated 8 months ago
• Project-MONAI / MetricsReloaded
  ☆92Updated 6 months ago
• MECLabTUDA / Lifelong-nnUNet
  ☆155Updated 2 months ago
• amine0110 / SAM-Medical-Imaging
  ☆119Updated 2 years ago
• ChenLiu-1996 / CUTS
  [MICCAI 2024] CUTS: A Deep Learning and Topological Framework for Multigranular Unsupervised Medical Image Segmentation
  ☆40Updated 7 months ago
• Jingnan-Jia / segmentation_metrics
  A package to compute medical segmentation metrics.
  ☆179Updated last year
• mazurowski-lab / SlicerSegmentWithSAM
  3D Slicer extension for Segment Anything Model (SAM) developed by Meta
  ☆68Updated 6 months ago
• MrGiovanni / AbdomenAtlas
  [NeurIPS 2023] AbdomenAtlas 1.0 (5,195 CT volumes + 9 annotated classes)
  ☆296Updated last month
• PytorchConnectomics / pytorch_connectomics
  PyTorch Connectomics: segmentation toolbox for EM connectomics
  ☆186Updated last week
• jocpae / clDice
  ☆258Updated last year
• ASHISRAVINDRAN / stardist_pytorch
  StarDist PyTorch
  ☆47Updated 3 years ago
• alexanderjaus / AtlasDataset
  ☆46Updated last year
• JunMa11 / AbdomenCT-1K
  The official repository of "AbdomenCT-1K: Is Abdominal Organ Segmentation A Solved Problem?"
  ☆259Updated 2 years ago
• AICONSlab / 3DINO
  [npj Digital Medicine] A generalizable 3D framework and model for self-supervised learning in medical imaging
  ☆90Updated last month
• bowang-lab / MedSAMSlicer
  3D Slicer Plugin for Segment anything in medical images
  ☆270Updated 8 months ago
• MIC-DKFZ / BodyPartRegression
  ☆77Updated 3 months ago
• AIM-Harvard / foundation-cancer-image-biomarker
  [Nature Machine Intelligence 2024] Code and evaluation repository for the paper
  ☆129Updated 9 months ago
• neheller / kits23
  The official repository of the 2023 Kidney Tumor Segmentation Challenge (KiTS23)
  ☆129Updated 4 months ago