sunericd / dynamicviz
☆58Updated last year
Related projects: ⓘ
- A spectral method for assessing and combining multiple data visualizations☆48Updated last year
- Testing if UMAP/tSNE overfit their intrinsic dimensionality☆13Updated last year
- Explaining dimensionality results using SHAP values☆51Updated last year
- Creating multi-resolution embeddings and clusters from high dimensional data☆47Updated 2 years ago
- Self-Supervised Vision Transformers for multiplexed imaging datasets☆41Updated 2 months ago
- Parallel opt-SNE implementation with Python wrapper☆36Updated 2 years ago
- ☆10Updated 4 months ago
- The art of using t-SNE for single-cell transcriptomics☆120Updated 4 years ago
- Tools for building and manipulating graphs in Python☆41Updated last year
- Picasso: a methods for embedding points in 2D in a way that respects distances while fitting a user-specified shape.☆69Updated 2 months ago
- LaTeX templates for manuscripts. bioRxiv preprint and journal submission templates. For use on Overleaf.☆61Updated 3 months ago
- Here we address the global structure preservation by tSNE and UMAP☆47Updated 4 years ago
- ☆16Updated 2 years ago
- ☆16Updated 2 years ago
- TISSUE (Transcript Imputation with Spatial Single-cell Uncertainty Estimation) provides tools for estimating well-calibrated uncertainty …☆28Updated 6 months ago
- The starter repository for submissions to the GeneDisco challenge for optimized experimental design in genetic perturbation experiments.☆24Updated 2 years ago
- Contrastive neighbor embeddings☆51Updated 4 months ago
- A Jupyter widget for comparing two embeddings with shared labels by their confusion, neighborhoods, and size.☆35Updated 5 months ago
- Initialization is critical for preserving global data structure in both t-SNE and UMAP☆21Updated 3 years ago
- EmbedGEM: A framework to evaluate the utility of embeddings for genetic discovery☆18Updated 9 months ago
- Here I explain the math behind UMAP and show how to program it from scratch in Python☆38Updated 3 years ago
- generalized principal component analysis (GLM-PCA) implemented in python☆56Updated 3 years ago
- Parametric UMAP embeddings for representation and semisupervised learning. From the paper "Parametric UMAP: learning embeddings with deep…☆149Updated 3 years ago
- Tofu is a Python tool for generating synthetic UK Biobank data.☆53Updated last year
- Python port of the Unidip clustering algorithm from: http://www.kdd.org/kdd2016/subtopic/view/skinny-dip-clustering-in-a-sea-of-noise☆36Updated last year
- Starter repository for submissions to the CausalBench challenge for gene-gene graph inference from genetic perturbation experiments.☆27Updated last year
- ☆33Updated last year
- Ideas, code and results of the 2018 CytoData hackathon☆11Updated 7 months ago
- Latent spaces for single cells☆22Updated 10 months ago
- GenoML (genoml2) is an open source Python package. It is an automated machine learning (autoML) platform for genomics data☆26Updated last month