davisidarta / topometry
Systematically learn and evaluate manifolds from high-dimensional data
☆95Updated last year
Alternatives and similar repositories for topometry:
Users that are interested in topometry are comparing it to the libraries listed below
- Picasso: a methods for embedding points in 2D in a way that respects distances while fitting a user-specified shape.☆70Updated 7 months ago
- generalized principal component analysis (GLM-PCA) implemented in python☆59Updated 4 years ago
- Single-cell multi-omics integration using Optimal Transport☆42Updated 6 months ago
- This Python package will allow you to replicate the experiments from our research on applying Optimal Transport as a similarity metric in…☆38Updated 2 years ago
- A collection of scripts and tools for loading, processing, and handling single cell data.☆72Updated last year
- Quantifying experimental perturbations at single cell resolution☆106Updated 5 months ago
- Latent spaces for single cells☆21Updated last year
- Creating multi-resolution embeddings and clusters from high dimensional data☆52Updated 5 months ago
- A fast, accurate, and modularized dimensionality reduction approach based on diffusion harmonics and graph layouts. Escalates to millions…☆48Updated 3 years ago
- Python client for the OmniPath web service☆43Updated last week
- An interface for Nested Stochastic Block Model for single cell analysis☆32Updated this week
- A spectral method for assessing and combining multiple data visualizations☆49Updated last year
- Fit generalized linear models in python.☆27Updated 2 years ago
- MultiMAP for integration of single cell multi-omics☆55Updated last year
- Regulatory networks with Direct Information in python☆40Updated 2 years ago
- ☆33Updated 3 years ago
- Companion repository to Lause, Berens & Kobak (2021): "Analytic Pearson residuals for normalization of single-cell RNA-seq UMI data", Gen…☆40Updated 2 years ago
- ☆15Updated last year
- Deep exponential families for single-cell data.☆21Updated 4 months ago
- Unified knowledge-driven network inference from omics data☆32Updated this week
- Dynamical systems methods for RNA velocity analysis☆24Updated 3 years ago
- Spatially aware dimension reduction for spatial transcriptomics.☆43Updated 10 months ago
- A library to simulate single-cell data☆2Updated last year
- Work with trained factor models in Python☆31Updated 4 months ago
- GraphCompass: Graph Comparison Tools for Differential Analyses in Spatial Systems☆35Updated last month
- Global Waddington-OT☆22Updated 6 months ago
- Parallel opt-SNE implementation with Python wrapper☆37Updated 2 years ago
- Methods for inferring undirected networks from data☆44Updated 3 years ago
- An object oriented python library for topological data analysis of high-throughput single-cell RNA-seq data☆51Updated 6 years ago
- A simulator for single-cell expression data guided by gene regulatory networks☆59Updated 10 months ago