Systematically learn and evaluate the latent geometry of high-dimensional data, with a focus on scRNAseq analysis
☆107Apr 1, 2026Updated 3 months ago
Alternatives and similar repositories for topometry
Users that are interested in topometry are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Hierarchical Uniform Manifold Approximation and Projection☆242Feb 18, 2025Updated last year
- Explaining dimensionality results using SHAP values☆56Jan 5, 2026Updated 5 months ago
- TARDIS: Topological Algorithms for Robust DIscovery of Singularities☆44Jul 28, 2023Updated 2 years ago
- Simplified script for applying the t-SNE diff method on high parameter flow cytometry data☆10Oct 31, 2023Updated 2 years ago
- A spectral method for assessing and combining multiple data visualizations☆50Jul 20, 2023Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆15Jan 24, 2023Updated 3 years ago
- Deprecated in favour of TopoMetry: https://github.com/davisidarta/topometry☆48Apr 7, 2026Updated 2 months ago
- Framework for sensitive DE testing (using neighbourhoods)☆78Nov 11, 2025Updated 7 months ago
- Variational Estimation of Latent Velocity from Expression with Time-resolution☆13May 30, 2024Updated 2 years ago
- Latent Embedding Multivariate Regression☆102May 19, 2026Updated last month
- Noise-Contrastive Visualization☆54Nov 25, 2023Updated 2 years ago
- ☆12May 30, 2023Updated 3 years ago
- Demultiplexing and debarcoding tool designed for LR-Split-seq data.☆25Oct 19, 2023Updated 2 years ago
- Nuclear fraction QC metric to detect empty droplets and damaged cells in scRNA-seq data☆42Nov 18, 2021Updated 4 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆10Apr 24, 2024Updated 2 years ago
- User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins☆79Mar 28, 2026Updated 3 months ago
- Information-based dimensionality reduction☆30Dec 14, 2024Updated last year
- ☆62Apr 5, 2024Updated 2 years ago
- ☆17Jul 12, 2024Updated last year
- Episcanpy: Epigenomics Single Cell Analysis in Python☆151Dec 5, 2024Updated last year
- Automated cell filtering for single-cell RNA sequencing data☆26Nov 14, 2023Updated 2 years ago
- Code, data and analysis for moslin.☆15Oct 7, 2024Updated last year
- From geospatial to spatial -omics☆103May 8, 2026Updated last month
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Uniform Manifold Approximation with Two-phase Optimization (IEEE VIS 2022 short)☆118Feb 11, 2026Updated 4 months ago
- A R package for multi-dimensional data visualization☆11Jul 15, 2025Updated 11 months ago
- Mapping sequencing data to De Bruijn graphs, fast☆37Jun 20, 2026Updated last week
- scNOVA : Single-Cell Nucleosome Occupancy and genetic Variation Analysis☆12Jul 29, 2023Updated 2 years ago
- R package implementation of Milo for testing for differential abundance in KNN graphs☆436May 11, 2026Updated last month
- ☆13Dec 14, 2023Updated 2 years ago
- Minimum-distortion embedding with PyTorch☆588Feb 26, 2026Updated 4 months ago
- Python implementation of Milo for differential abundance testing on KNN graph☆84Feb 17, 2025Updated last year
- Significance analysis for clustering single-cell RNA-sequencing data☆127Sep 7, 2024Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆10Jul 10, 2024Updated last year
- Testing if UMAP/tSNE overfit their intrinsic dimensionality☆15Jul 31, 2023Updated 2 years ago
- ☆12Mar 18, 2026Updated 3 months ago
- Automated ingestion and conversion of various single-cell data formats, within and across species☆15Jan 26, 2026Updated 5 months ago
- ☆24Dec 11, 2021Updated 4 years ago
- An R package for correcting p-values for multiple hypothesis testing in comparative quantitative omics experiments using permutation-base…☆12Mar 11, 2026Updated 3 months ago
- ☆97Apr 18, 2024Updated 2 years ago