davisidarta / topometryLinks
Systematically learn and evaluate manifolds from high-dimensional data
☆99Updated last year
Alternatives and similar repositories for topometry
Users that are interested in topometry are comparing it to the libraries listed below
Sorting:
- Picasso: a methods for embedding points in 2D in a way that respects distances while fitting a user-specified shape.☆70Updated 11 months ago
- An interface for Nested Stochastic Block Model for single cell analysis☆35Updated 3 months ago
- Fit generalized linear models in python.☆28Updated 2 years ago
- generalized principal component analysis (GLM-PCA) implemented in python☆60Updated 4 years ago
- This Python package will allow you to replicate the experiments from our research on applying Optimal Transport as a similarity metric in…☆38Updated 2 years ago
- Single-cell multi-omics integration using Optimal Transport☆45Updated 9 months ago
- A collection of scripts and tools for loading, processing, and handling single cell data.☆72Updated 2 years ago
- MultiMAP for integration of single cell multi-omics☆56Updated last year
- Quantifying experimental perturbations at single cell resolution☆109Updated 9 months ago
- A library to simulate single-cell data☆2Updated 2 years ago
- Regulatory networks with Direct Information in python☆40Updated 2 years ago
- Spatial Transcriptomics Dashboard☆27Updated last year
- Latent spaces for single cells☆21Updated last year
- ☆33Updated 3 years ago
- A fast, accurate, and modularized dimensionality reduction approach based on diffusion harmonics and graph layouts. Escalates to millions…☆48Updated 4 years ago
- Companion repository to Lause, Berens & Kobak (2021): "Analytic Pearson residuals for normalization of single-cell RNA-seq UMI data", Gen…☆40Updated 3 years ago
- Creating multi-resolution embeddings and clusters from high dimensional data☆53Updated 9 months ago
- Dynamical systems methods for RNA velocity analysis☆24Updated 4 years ago
- ☆42Updated 10 months ago
- Parallel opt-SNE implementation with Python wrapper☆37Updated 3 years ago
- Single-cell Hierarchical Poisson Factorization☆70Updated 2 years ago
- Work with trained factor models in Python☆33Updated 8 months ago
- Python client for the OmniPath web service☆45Updated last month
- Nonnegative spatial factorization for multivariate count data☆58Updated last year
- Gaussian process regression package for counts data with negative binomial and zero-inflated negative binomial likelihoods☆21Updated 4 months ago
- Deep exponential families for single-cell data.☆21Updated 7 months ago
- Tools for building and manipulating graphs in Python☆41Updated this week
- Spatially aware dimension reduction for spatial transcriptomics.☆50Updated 3 months ago
- An object oriented python library for topological data analysis of high-throughput single-cell RNA-seq data☆51Updated 6 years ago
- ☆22Updated 2 years ago