davisidarta / topometryLinks
Systematically learn and evaluate manifolds from high-dimensional data
☆104Updated 3 months ago
Alternatives and similar repositories for topometry
Users that are interested in topometry are comparing it to the libraries listed below
Sorting:
- Picasso: a methods for embedding points in 2D in a way that respects distances while fitting a user-specified shape.☆72Updated 4 months ago
- generalized principal component analysis (GLM-PCA) implemented in python☆61Updated 5 years ago
- This Python package will allow you to replicate the experiments from our research on applying Optimal Transport as a similarity metric in…☆43Updated 3 years ago
- An interface for Nested Stochastic Block Model for single cell analysis☆36Updated 4 months ago
- Single-cell multi-omics integration using Optimal Transport☆50Updated 5 months ago
- A spectral method for assessing and combining multiple data visualizations☆50Updated 2 years ago
- Parallel opt-SNE implementation with Python wrapper☆38Updated 3 years ago
- A collection of scripts and tools for loading, processing, and handling single cell data.☆76Updated 4 months ago
- Latent spaces for single cells☆21Updated 2 years ago
- Fit generalized linear models in python.☆28Updated 2 years ago
- Tools for building and manipulating graphs in Python☆46Updated last month
- Companion repository to Lause, Berens & Kobak (2021): "Analytic Pearson residuals for normalization of single-cell RNA-seq UMI data", Gen…☆40Updated 3 years ago
- ☆33Updated 4 years ago
- Creating multi-resolution embeddings and clusters from high dimensional data☆58Updated last year
- Dynamical systems methods for RNA velocity analysis☆24Updated 4 years ago
- Quantifying experimental perturbations at single cell resolution☆112Updated last year
- An object oriented python library for topological data analysis of high-throughput single-cell RNA-seq data☆52Updated 7 years ago
- ☆20Updated 4 years ago
- factor models for omics data☆32Updated last week
- HiDeF (Hierarchical community Decoding Framework)☆15Updated 2 years ago
- Regulatory networks with Direct Information in python☆40Updated 2 years ago
- Alignment of spatial genomics data using deep Gaussian processes☆31Updated 3 years ago
- Here we address the global structure preservation by tSNE and UMAP☆47Updated 5 years ago
- Deep exponential families for single-cell data.☆20Updated 3 weeks ago
- Spatial Transcriptomics Dashboard☆27Updated 2 years ago
- Biological Network Integration using Convolutions☆63Updated 2 years ago
- A probabilistic factor model for spatial transcriptomics data with subcellular resolution☆25Updated 2 years ago
- Finding the causality in biological pathways☆14Updated 2 years ago
- Create PyTorch Datasets from AnnData☆21Updated last month
- Categorical Variational Autoencoders☆24Updated 4 years ago