bmda-unibas / DeepArchetypeAnalysisLinks
TensorFlow-Implementation of Deep Archetypal Analysis
☆13Updated 3 years ago
Alternatives and similar repositories for DeepArchetypeAnalysis
Users that are interested in DeepArchetypeAnalysis are comparing it to the libraries listed below
Sorting:
- Simulate single-cell RNA-SEQ data using the Splatter statistical framework but implemented in python. In addition, simulate doublet cells…☆27Updated 3 years ago
- Archetypal Analysis network (AAnet)☆35Updated 5 months ago
- Maximum mean discrepancy comparisons for single cell profiling experiments☆16Updated 3 years ago
- Single-cell archetypal analysis neural network☆14Updated 3 years ago
- A multi-view latent variable model with domain-informed structured sparsity for integrating noisy feature sets.☆31Updated 2 months ago
- ☆19Updated 4 years ago
- Gaussian process regression package for counts data with negative binomial and zero-inflated negative binomial likelihoods☆22Updated 4 months ago
- This is the repository for the single-cell transcriptomics application of the Deep Generative Decoder (DGD), developed by the Krogh group…☆14Updated 11 months ago
- Creating multi-resolution embeddings and clusters from high dimensional data☆54Updated 9 months ago
- Marker Selection by matching manifolds and elastic net☆23Updated 8 months ago
- Conditional out-of-distribution prediction☆62Updated 11 months ago
- An unsupervised scRNA-seq analysis workflow with graph attention networks☆26Updated 2 years ago
- Create cell sentences from sequencing data☆22Updated 11 months ago
- A python package for performing single NMF and joint NMF algorithms☆14Updated last year
- A quantitative framework for evaluating data structure preservation by dimensionality reduction techniques☆16Updated 4 years ago
- nimfa - A Python Library for Nonnegative Matrix Factorization Techniques☆10Updated 6 years ago
- Work with trained factor models in Python☆33Updated 8 months ago
- Generative adversarial networks for single-cell RNA-seq imputation☆39Updated 4 years ago
- Imputation of single cell RNA-sequencing data with autoencoder☆16Updated 4 years ago
- Reproducibility for the "Harmonization and Annotation of Single-cell Transcriptomics data with Deep Generative Models" paper☆13Updated 3 years ago
- A data analysis package for high-dimensional, multi-block data.☆12Updated 3 years ago
- MultiMAP for integration of single cell multi-omics☆56Updated last year
- ☆63Updated last year
- ☆55Updated last year
- Quantifying experimental perturbations at single cell resolution☆109Updated 9 months ago
- ☆27Updated last year
- Single-cell multi-omics integration using Optimal Transport☆45Updated 10 months ago
- Python client for the OmniPath web service☆45Updated 3 weeks ago
- ☆67Updated last year
- a light structured Residual autoencoder and mutual nearest neighbor Paring guided Adversarial Network for scRNA-seq batch correction☆15Updated 2 years ago