bmda-unibas / DeepArchetypeAnalysisLinks
TensorFlow-Implementation of Deep Archetypal Analysis
☆13Updated 3 years ago
Alternatives and similar repositories for DeepArchetypeAnalysis
Users that are interested in DeepArchetypeAnalysis are comparing it to the libraries listed below
Sorting:
- Archetypal Analysis network (AAnet)☆33Updated 4 months ago
- A multi-view latent variable model with domain-informed structured sparsity for integrating noisy feature sets.☆31Updated last month
- Work with trained factor models in Python☆33Updated 7 months ago
- Alignment of spatial genomics data using deep Gaussian processes☆26Updated 2 years ago
- Simulate single-cell RNA-SEQ data using the Splatter statistical framework but implemented in python. In addition, simulate doublet cells…☆27Updated 3 years ago
- Distributed single-cell data analysis.☆31Updated 3 weeks ago
- A probabilistic factor model for spatial transcriptomics data with subcellular resolution☆23Updated 2 years ago
- This Python package will allow you to replicate the experiments from our research on applying Optimal Transport as a similarity metric in…☆38Updated 2 years ago
- Template repository for creating novel models with scvi-tools☆20Updated 2 years ago
- Gaussian process regression package for counts data with negative binomial and zero-inflated negative binomial likelihoods☆21Updated 3 months ago
- A quantitative framework for evaluating data structure preservation by dimensionality reduction techniques☆16Updated 4 years ago
- Deep exponential families for single-cell data.☆21Updated 6 months ago
- resVAE is a restricted latent variational autoencoder that we wrote to uncover hidden structures in gene expression data, especially usin…☆12Updated 2 years ago
- Spatially aware dimension reduction for spatial transcriptomics.☆49Updated 2 months ago
- Unified knowledge-driven network inference from omics data☆41Updated 2 weeks ago
- Nonnegative spatial factorization for multivariate count data☆58Updated last year
- Single-cell multi-omics integration using Optimal Transport☆44Updated 9 months ago
- generalized principal component analysis (GLM-PCA) implemented in python☆60Updated 4 years ago
- Simple scVI implementation☆11Updated last week
- MultiMAP for integration of single cell multi-omics☆56Updated last year
- Registry for scverse ecosystem packages (https://scverse.org/packages/#ecosystem)☆23Updated this week
- Dynamic inference from single-cell snapshots by optimal transport☆19Updated last year
- Maximum mean discrepancy comparisons for single cell profiling experiments☆16Updated 3 years ago
- ☆100Updated 2 years ago
- Create PyTorch Datasets from AnnData☆20Updated 3 months ago
- SingleCellFusion--a tool to integrate single-cell transcriptome and epigenome data☆12Updated 3 years ago
- ☆19Updated 4 years ago
- NetworkCommons is a community-driven platform designed to simplify access to tools and resources for inferring context-specific protein i…☆25Updated last month
- Single-cell archetypal analysis neural network☆14Updated 3 years ago
- Global Waddington-OT☆23Updated 2 months ago