Alternatives and similar repositories for ARES-implement

Users that are interested in ARES-implement are comparing it to the libraries listed below

• LPDI-EPFL / masif_seed
  Masif seed paper repository
  ☆173Updated 4 months ago
• DeepGraphLearning / S3F
  Sequence-Structure-Surface Model for Protein Fitness Prediction (S3F)
  ☆47Updated last year
• DeepGraphLearning / GearBind
  Pretrainable geometric graph neural network for antibody affinity maturation
  ☆71Updated 10 months ago
• Graylab / FLAb
  Fitness landscapes for antibodies
  ☆146Updated last month
• DeepGraphLearning / ESM-GearNet
  ESM-GearNet for Protein Structure Representation Learning (https://arxiv.org/abs/2303.06275)
  ☆111Updated 2 years ago
• piercelab / antibody_benchmark
  Antibody-Antigen Docking and Affinity Benchmark
  ☆76Updated 5 years ago
• stebliankin / piston
  Evaluating Protein Binding Interfaces with Transformer Networks
  ☆47Updated 2 years ago
• jeffreyruffolo / AntiBERTy
  Antibody-specific masked language model
  ☆67Updated 2 years ago
• chloechsu / combining-evolutionary-and-assay-labelled-data
  ☆76Updated 4 years ago
• HBioquant / DiffBindFR
  Diffusion model based protein-ligand flexible docking method
  ☆117Updated last year
• bytedance / Protenix-Dock
  An accurate and trainable end-to-end protein-ligand docking framework
  ☆121Updated 10 months ago
• LPDI-EPFL / masif-neosurf
  MaSIF-neosurf: surface-based protein design for ternary complexes.
  ☆165Updated 2 months ago
• CAODH / EquiScore
  ☆82Updated 2 years ago
• dahjan / DMS_opt
  ☆74Updated 5 years ago
• jertubiana / ScanNet
  ☆138Updated 7 months ago
• wengong-jin / DSMBind
  ☆96Updated last year
• hefeda / design_tools
  A compilation of deep learning methods for protein design
  ☆97Updated 3 years ago
• samsledje / ConPLex_dev
  ☆54Updated last year
• TencentAI4S / tfold
  open source code for Tencent tFold
  ☆142Updated 10 months ago
• wengong-jin / abdockgen
  ☆108Updated 2 years ago
• legendzzy / ProAffinity-GNN
  ☆20Updated 6 months ago
• richardshuai / fampnn
  Sidechain conditioning and modeling for full-atom protein sequence design
  ☆133Updated 2 months ago
• zhanghaicang / carbonmatrix_public
  ☆118Updated last month
• bcov77 / silent_tools
  A bunch of shell utilities for dealing the silent files
  ☆76Updated last month
• JocelynSong / SurfPro
  ☆35Updated 10 months ago
• bowen-gao / DrugCLIP
  [NeurIPS 2023] DrugCLIP: Contrastive Protein-Molecule Representation Learning for Virtual Screening
  ☆182Updated 2 weeks ago
• marcellszi / rna3db
  A dataset for training and benchmarking deep learning models for RNA structure prediction
  ☆62Updated 3 weeks ago
• meilerlab / HyperMPNN
  HyperMPNN ‒ A general strategy to design thermostable proteins learned from hyperthermophiles
  ☆70Updated 7 months ago
• levinthal / Pallatom
  ☆133Updated 8 months ago
• LBM-EPFL / PeSTo
  Geometric deep learning method to predict protein binding interfaces from a protein structure.
  ☆155Updated 2 years ago