ARES implement in PyTorch
☆15Feb 27, 2024Updated 2 years ago
Alternatives and similar repositories for ARES-implement
Users that are interested in ARES-implement are comparing it to the libraries listed below
Sorting:
- NuFold: End-to-End Approach for RNA Tertiary Structure Prediction with Flexible Nucleobase Center Representation☆50Oct 31, 2025Updated 4 months ago
- Robust RNA structure refinement by a nucleobase-centric sampling algorithm coupled with a backbone rotameric and quantum-mechanical-energ…☆19Apr 3, 2021Updated 4 years ago
- A dataset for training and benchmarking deep learning models for RNA structure prediction☆63Feb 12, 2026Updated 2 weeks ago
- A repository for neural representational learning of RNA secondary structures☆32Feb 13, 2020Updated 6 years ago
- Perl scripts for analysis RIC-seq data☆11Feb 6, 2020Updated 6 years ago
- Scalable Deep Learning for RNA Secondary Structure Prediction☆40Sep 23, 2025Updated 5 months ago
- This is my paper.☆10Jun 24, 2023Updated 2 years ago
- ☆38Dec 15, 2023Updated 2 years ago
- A pipeline for precise extraction of light curves through forward modelling of a region from time-series wide-field astronomical images☆10Jul 17, 2025Updated 7 months ago
- Official repository of the data-driven deconvolution approach Sweetwater.☆15Sep 9, 2025Updated 5 months ago
- Source code of the Stanford Ribonanza RNA Folding first place solution☆41Dec 21, 2023Updated 2 years ago
- A unified and modular interface to homology modelling software☆12Sep 27, 2023Updated 2 years ago
- This repository contains all DeepCLIP Python code☆11May 30, 2024Updated last year
- Collisional cross-section prediction for modified and multiconformational peptides☆13Feb 18, 2026Updated last week
- ☆15Jan 27, 2025Updated last year
- Curated structures submitted to the RNA-Puzzles experiment. Download as a zip file https://github.com/mmagnus/RNA-Puzzles-submission/arch…☆10Apr 6, 2023Updated 2 years ago
- to assess structural quality of RNA using 3D CNN☆13Aug 17, 2018Updated 7 years ago
- Contrastive learning of protein representations with graph neural networks for structural and functional annotations☆11Apr 23, 2023Updated 2 years ago
- A python script for PyMol to make protein-ligand interaction images.☆18Apr 1, 2025Updated 11 months ago
- Nature Methods: RhoFold+, Accurate RNA 3D structure prediction using a language model-based deep learning approach☆216May 29, 2025Updated 9 months ago
- ☆13Oct 19, 2023Updated 2 years ago
- ☆17May 30, 2025Updated 9 months ago
- Dock Multiple Ligands with AutoDock Vina with one Command☆11Jan 10, 2018Updated 8 years ago
- ☆15Feb 18, 2025Updated last year
- Predict binding affinity of ligand-protein complexes using Graph Neural Networks. The model is implemented using PyTorch Geometric and ba…☆11Nov 26, 2022Updated 3 years ago
- ☆13Oct 25, 2025Updated 4 months ago
- iDeepV: predicting RBP binding sites using vector representation learned from sequences with a CNN.☆10Jul 16, 2019Updated 6 years ago
- The Vini in silico model of cancer☆12Feb 17, 2026Updated last week
- bpRNA: Large-scale Annotation and Analysis of RNA Secondary Structure☆51Nov 23, 2023Updated 2 years ago
- This is the code for our paper Ligand Binding Prediction using Protein Structure Graphs and Residual Graph Attention Networks☆11Apr 29, 2022Updated 3 years ago
- Jax code for functional genomics ML☆14Mar 5, 2025Updated 11 months ago
- This repository provides C++17 command-line tools for analyzing molecular structures by computing volumes, channels, cavities, and tunnel…☆14Jan 29, 2026Updated last month
- Improved ab initio protein structure reconstruction☆15Mar 7, 2018Updated 7 years ago
- BertSNR: an interpretable deep learning framework for single nucleotide resolution identification of transcription factor binding sites b…☆13May 27, 2025Updated 9 months ago
- ☆11Sep 3, 2025Updated 5 months ago
- ☆15Sep 9, 2025Updated 5 months ago
- Analysis framework of dissipation-corrected targeted molecular dynamics (dcTMD) simulations.☆16Updated this week
- S2F: protein function without experiments☆16Nov 24, 2025Updated 3 months ago
- DynamiSpectra: Decode molecular motion with precision and power☆20Sep 16, 2025Updated 5 months ago