Jian-Zhan / RNA-BRiQ
Robust RNA structure refinement by a nucleobase-centric sampling algorithm coupled with a backbone rotameric and quantum-mechanical-energy-scaled base-base knowledge-based potential
☆15Updated 3 years ago
Alternatives and similar repositories for RNA-BRiQ:
Users that are interested in RNA-BRiQ are comparing it to the libraries listed below
- A domain parser for Alphafold models☆34Updated last year
- A tool for accurate prediction of a protein's secondary structure from only it's amino acid sequence☆52Updated 2 months ago
- ☆25Updated 8 months ago
- Machine learning prediction of enzyme optimum pH☆29Updated 2 weeks ago
- ☆22Updated last year
- ☆49Updated 8 months ago
- Predicting the effect of mutations on protein stability and protein binding affinity using pretrained neural networks and a ranking objec…☆19Updated 3 years ago
- Direct coupling analysis software for protein and RNA sequences☆50Updated last year
- Graph-based community clustering approach to extract protein domains from a predicted aligned error matrix☆34Updated 2 years ago
- GTalign, HPC protein structure alignment, superposition and search (alpha release)☆41Updated last month
- ☆34Updated 4 months ago
- Detection of remote homology by comparison of protein language model representations☆47Updated 2 months ago
- scripts and facilities for in-silico mutagenesis with FoldX☆56Updated 2 months ago
- RNA Multiple Sequence Alignment☆32Updated last year
- Rapid protein-protein interaction network creation from multiple sequence alignments with Deep Learning☆81Updated 10 months ago
- Transmembrane proteins predicted through Language Model embeddings☆33Updated 3 weeks ago
- Python package to manage protein structures and their annotations☆42Updated 11 months ago
- Structure-based self-supervised learning enables ultrafast prediction of stability changes upon mutations☆38Updated last week
- Code and data to reproduce analyses in Biswas et al. (2020) "Low-N protein engineering with data-efficient deep learning".☆57Updated 3 years ago
- Fast and accurate protein domain segmentation using Invariant Point Attention☆33Updated 2 months ago
- PyMissense creates the pathogenicity plot and modified pdb as shown in the AlphaMissense paper for custom proteins.☆23Updated last year
- ☆28Updated last year
- Rendering protein mutation movies from predicted 3D structures☆20Updated last year
- Next generation sequence parameter library for proteins☆26Updated last month
- predict stability change upon mutation☆27Updated 7 months ago
- ☆31Updated 4 months ago
- ColabFold protocol☆48Updated 4 months ago
- Ultra-fast in-silico structure mutation☆32Updated 2 years ago
- ☆28Updated 3 years ago
- Generator and regressor neural networks for antimicrobial peptides☆21Updated last year