Jian-Zhan / RNA-BRiQLinks
Robust RNA structure refinement by a nucleobase-centric sampling algorithm coupled with a backbone rotameric and quantum-mechanical-energy-scaled base-base knowledge-based potential
☆18Updated 4 years ago
Alternatives and similar repositories for RNA-BRiQ
Users that are interested in RNA-BRiQ are comparing it to the libraries listed below
Sorting:
- ☆53Updated last month
- Direct coupling analysis software for protein and RNA sequences☆52Updated 2 months ago
- Machine learning prediction of enzyme optimum pH☆45Updated 4 months ago
- A domain parser for Alphafold models☆40Updated last year
- ☆30Updated last year
- Rapid protein-protein interaction network creation from multiple sequence alignments with Deep Learning☆90Updated last year
- Predicting the effect of mutations on protein stability and protein binding affinity using pretrained neural networks and a ranking objec…☆23Updated 4 years ago
- A tool for accurate prediction of a protein's secondary structure from only it's amino acid sequence☆59Updated 5 months ago
- ☆37Updated 3 months ago
- Fast and accurate protein domain segmentation using Invariant Point Attention☆41Updated 4 months ago
- Deciphering protein evolution and fitness landscapes with latent space models☆35Updated 3 years ago
- scripts and facilities for in-silico mutagenesis with FoldX☆59Updated 2 months ago
- Fast indexing and search of discontinuous motifs in protein structures☆82Updated 2 weeks ago
- Code and data to reproduce analyses in Biswas et al. (2020) "Low-N protein engineering with data-efficient deep learning".☆59Updated 4 years ago
- GTalign, high-performance protein structure alignment, superposition and search☆50Updated last month
- ☆43Updated last year
- Geometric deep learning of protein–DNA binding specificity☆75Updated 6 months ago
- A dataset for training and benchmarking deep learning models for RNA structure prediction☆59Updated 2 weeks ago
- TemStaPro - a program for protein thermostability prediction using sequence representations from a protein language model.☆64Updated last year
- Detection of remote homology by comparison of protein language model representations☆55Updated 9 months ago
- AlphaFill is an algorithm based on sequence and structure similarity that “transplants” missing compounds to the AlphaFold models. By add…☆106Updated 4 months ago
- Fork of matteofigliuzzi/bmDCA repository for Boltzmann-machine Direct Coupling Analysis (bmDCA).☆35Updated 5 years ago
- ☆42Updated last month
- ☆17Updated 2 years ago
- Mutation effects predicted from sequence co-variation☆69Updated 8 years ago
- Graph Network for protein-protein interface including language model features☆32Updated last year
- The DSSP building software☆47Updated 2 years ago
- ☆36Updated 8 months ago
- Fast protein structure searching or your money back☆113Updated 5 months ago
- Neural networks to fit interpretable models and quantify energies, energetic couplings, epistasis, and allostery from deep mutational sca…☆53Updated 5 months ago