An RNA manipulation library.
☆56Feb 16, 2024Updated 2 years ago
Alternatives and similar repositories for forgi
Users that are interested in forgi are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Create force-directed graphs of RNA secondary structures.☆111Jun 6, 2020Updated 6 years ago
- The ViennaRNA Package☆413Feb 24, 2026Updated 4 months ago
- Sample and predict coarse grain 3D RNA structures☆10Feb 12, 2024Updated 2 years ago
- A container for the forna visualization software.☆22May 30, 2024Updated 2 years ago
- ☆17May 11, 2026Updated last month
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- RNAlien - unsupervised RNA family model construction☆13Jun 8, 2021Updated 5 years ago
- A pipeline for structural clustering of RNA secondary structures☆15Apr 21, 2021Updated 5 years ago
- A platform to do RNA science☆28Mar 7, 2021Updated 5 years ago
- Template-based RNA secondary structure visualization☆29Nov 20, 2024Updated last year
- omniCLIP is a CLIP-Seq peak caller☆16Nov 14, 2020Updated 5 years ago
- SHApe simulation with graph KERnels☆10May 17, 2021Updated 5 years ago
- 🔧rna-tools: a toolbox to analyze sequences, structures and simulations of RNA (and more) used by RNA CASP, RNA PUZZLES, and me ;-) docs …☆185Apr 8, 2026Updated 2 months ago
- HiGlass track for displaying arcs between disconnected regions☆10Dec 13, 2022Updated 3 years ago
- awesome tools for RNA☆17Nov 15, 2022Updated 3 years ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- MONSDA, Modular Organizer of Nextflow and Snakemake driven hts Data Analysis☆12Jun 23, 2026Updated last week
- Analyse Nucleic Acids Structure and Simulations with baRNAba☆58Mar 20, 2024Updated 2 years ago
- pdbx is a parser module in python for structures of the protein data bank in the mmcif format☆31Aug 9, 2024Updated last year
- domain-level nucleic acid reaction enumeration☆10Aug 23, 2023Updated 2 years ago
- A Perl extension and collection of utilities for Next-Generation Sequencing (NGS) data analysis☆23Oct 31, 2025Updated 8 months ago
- A Kotlin DSL to create and plot RNA 2D structures. The drawing engine behind RNArtist to be used from the command line.☆30Mar 23, 2026Updated 3 months ago
- Dockerfiles to build Galaxy images☆24Aug 22, 2023Updated 2 years ago
- A multiple sequence alignment viewer☆26Jun 20, 2026Updated last week
- Kinetic DNA strand displacement analyzer☆17Oct 28, 2025Updated 8 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Accompanying repository for GkmExplain paper☆23Aug 20, 2020Updated 5 years ago
- Nucleic acids Structure Prediction☆10May 21, 2020Updated 6 years ago
- Draw RNA secondary structures☆10Aug 20, 2021Updated 4 years ago
- Python snippets for PyMOL to be run in Jupyterlab via the jupyterlab-snippets-multimenus extension.☆26May 9, 2024Updated 2 years ago
- ☆14Dec 10, 2018Updated 7 years ago
- Galaxy RNA workbench☆41Oct 10, 2020Updated 5 years ago
- RNA Structural Covariation Above Phylogenetic Expectation☆23Jun 19, 2026Updated last week
- Contact-based protein structure prediction☆10Feb 12, 2019Updated 7 years ago
- Python implementation of the FR3D software for searching and annotating RNA 3D structures☆24Updated this week
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- A suite for the analysis of CLIP-Seq datasets.☆12Jan 31, 2022Updated 4 years ago
- Improved ab initio protein structure reconstruction☆15Mar 7, 2018Updated 8 years ago
- MXfold2: RNA secondary structure prediction using deep learning with thermodynamic integration☆161Mar 22, 2026Updated 3 months ago
- A Python script to map PDB ID + chain ID to UniProt ID.☆18Mar 7, 2024Updated 2 years ago
- Integrative Python library for RNA Secondary Structure Analysis☆20Mar 26, 2025Updated last year
- ☆39Dec 15, 2023Updated 2 years ago
- An R package to process and analyze transcriptomic data☆19Jun 18, 2025Updated last year