An RNA manipulation library.
☆56Feb 16, 2024Updated 2 years ago
Alternatives and similar repositories for forgi
Users that are interested in forgi are comparing it to the libraries listed below
Sorting:
- Create force-directed graphs of RNA secondary structures.☆110Jun 6, 2020Updated 5 years ago
- The ViennaRNA Package☆389Feb 24, 2026Updated 3 weeks ago
- A container for the forna visualization software.☆21May 30, 2024Updated last year
- ☆17Nov 19, 2025Updated 4 months ago
- RNAlien - unsupervised RNA family model construction☆13Jun 8, 2021Updated 4 years ago
- A pipeline for structural clustering of RNA secondary structures☆15Apr 21, 2021Updated 4 years ago
- A platform to do RNA science☆27Mar 7, 2021Updated 5 years ago
- Template-based RNA secondary structure visualization☆28Nov 20, 2024Updated last year
- omniCLIP is a CLIP-Seq peak caller☆16Nov 14, 2020Updated 5 years ago
- SHApe simulation with graph KERnels☆11May 17, 2021Updated 4 years ago
- 🔧rna-tools: a toolbox to analyze sequences, structures and simulations of RNA (and more) used by RNA CASP, RNA PUZZLES, and me ;-) docs …☆184Updated this week
- HiGlass track for displaying arcs between disconnected regions☆10Dec 13, 2022Updated 3 years ago
- awesome tools for RNA☆17Nov 15, 2022Updated 3 years ago
- MONSDA, Modular Organizer of Nextflow and Snakemake driven hts Data Analysis☆12Feb 16, 2026Updated last month
- Analyse Nucleic Acids Structure and Simulations with baRNAba☆49Mar 20, 2024Updated 2 years ago
- pdbx is a parser module in python for structures of the protein data bank in the mmcif format☆30Aug 9, 2024Updated last year
- RNAcentral website source code☆33Updated this week
- A Perl extension and collection of utilities for Next-Generation Sequencing (NGS) data analysis☆23Oct 31, 2025Updated 4 months ago
- A Kotlin DSL to create and plot RNA 2D structures. The drawing engine behind RNArtist to be used from the command line.☆31Mar 12, 2026Updated last week
- Dockerfiles to build Galaxy images☆24Aug 22, 2023Updated 2 years ago
- A multiple sequence alignment viewer☆25Jan 25, 2026Updated last month
- GraphProt: modelling binding preferences of RNA-binding proteins☆20Jul 19, 2018Updated 7 years ago
- RNA Structural Covariation Above Phylogenetic Expectation☆18Dec 12, 2025Updated 3 months ago
- Accompanying repository for GkmExplain paper☆23Aug 20, 2020Updated 5 years ago
- Draw RNA secondary structures☆10Aug 20, 2021Updated 4 years ago
- Python snippets for PyMOL to be run in Jupyterlab via the jupyterlab-snippets-multimenus extension.☆25May 9, 2024Updated last year
- Galaxy RNA workbench☆41Oct 10, 2020Updated 5 years ago
- Contact-based protein structure prediction☆10Feb 12, 2019Updated 7 years ago
- RNAcode - Detecting protein coding genes in multiple sequence alignment☆25Aug 22, 2024Updated last year
- A suite for the analysis of CLIP-Seq datasets.☆12Jan 31, 2022Updated 4 years ago
- Improved ab initio protein structure reconstruction☆15Mar 7, 2018Updated 8 years ago
- Multiple sequence alignment visualizer☆31Jan 26, 2023Updated 3 years ago
- ☆38Dec 15, 2023Updated 2 years ago
- networkx graphs to ascii☆11Feb 8, 2026Updated last month
- MXfold2: RNA secondary structure prediction using deep learning with thermodynamic integration☆160Mar 9, 2026Updated last week
- Direct coupling analysis software for protein and RNA sequences☆60Jul 21, 2025Updated 8 months ago
- Integrative Python library for RNA Secondary Structure Analysis☆20Mar 26, 2025Updated 11 months ago
- A Python script to map PDB ID + chain ID to UniProt ID.☆18Mar 7, 2024Updated 2 years ago
- An R package to process and analyze transcriptomic data☆19Jun 18, 2025Updated 9 months ago