Alternatives and similar repositories for S3AI

Users that are interested in S3AI are comparing it to the libraries listed below

• LBM-EPFL / CARBonAra
  Deep learning framework for protein sequence design from a backbone scaffold that can leverage the molecular context including non-protei…
  ☆46Updated last month
• Hong-yu-Zhang / OmniESI
  The official code repository of "OmniESI: A unified framework for enzyme-substrate interaction prediction with progressive conditional de…
  ☆26Updated 4 months ago
• CarbonMatrixLab / carbonnovo
  Official open-source of CarbonNovo: Joint Design of Protein Structure and Sequence Using a Unified Energy-based Model
  ☆25Updated last year
• liuyf020419 / SCUBA-D
  ☆61Updated last year
• ShenLab / SeqDance
  code for SeqDance/ESMDance, biophysics-informed protein language models
  ☆41Updated 8 months ago
• Gonglab-THU / GeoStab
  ☆39Updated last year
• Kuhlman-Lab / evopro
  ☆93Updated 2 months ago
• luo-group / MODIFY
  ML-optimized library design with improved fitness and diversity for protein engineering
  ☆36Updated last month
• meilerlab / HyperMPNN
  HyperMPNN ‒ A general strategy to design thermostable proteins learned from hyperthermophiles
  ☆69Updated 5 months ago
• TencentAI4S / HuDiff
  Code for humanization of antibody and nanobody
  ☆67Updated 4 months ago
• stebliankin / piston
  Evaluating Protein Binding Interfaces with Transformer Networks
  ☆46Updated 2 years ago
• pengzhangzhi / ab_opt
  Official implementation of Generative Diffusion Models for Antibody Design, Docking, and Optimization.
  ☆60Updated 2 years ago
• KexinZhangResearch / PhysDock
  Physics-Guided All-Atom Diffusion Model for Accurate Protein-Ligand Complex Prediction
  ☆84Updated 2 months ago
• Wublab / Pythia
  Structure-based self-supervised learning enables ultrafast prediction of stability changes upon mutations
  ☆85Updated 2 weeks ago
• PeptoneLtd / proteinmpnn_ddg
  Novel estimator for the change in stability upon point mutation in monomeric and multimeric proteins.
  ☆57Updated 7 months ago
• mabr3112 / riff_diff_protflow
  ProtFlow Implementation of the RiffDiff pipeline to design enzymes from theozymes.
  ☆62Updated 3 weeks ago
• kiharalab / Distance-AF
  Public version for Distance-AF
  ☆29Updated 4 months ago
• hongliangduan / HighFold
  ☆36Updated last year
• AspirinCode / AlphaPPImd
  Exploring the conformational ensembles of protein-protein complexes with transformer-based generative neural networks
  ☆32Updated last year
• ComputArtCMCG / ProBID-NET
  ☆16Updated 6 months ago
• anirudhvenk / antibody-dpo
  ☆25Updated 7 months ago
• bytedance / PXDesign
  Official repository of PXDesign
  ☆114Updated last week
• CAODH / EquiScore
  ☆81Updated last year
• mjendrusch / salad
  protein structure generation with sparse all-atom denoising models
  ☆51Updated 2 weeks ago
• nohandsomewujun / FlowDesign
  ☆32Updated 4 months ago
• danny305 / StabilityOracle
  ☆29Updated 2 months ago
• WillHua127 / GENzyme
  Official repository of GENzyme
  ☆59Updated last year
• huifengzhao / RAPiDock
  ☆74Updated 2 months ago
• meneshail / TopoDiff
  Code release for "Improving diffusion-based protein backbone generation with global-geometry-aware latent encoding"
  ☆44Updated 4 months ago
• KULL-Centre / _2023_Blaabjerg_SSEmb
  ☆39Updated last year