S2F: protein function without experiments
☆15Nov 24, 2025Updated 11 months ago
Alternatives and similar repositories for S2F
Users that are interested in S2F are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Precision-Recall based assessment for CAFA☆16Dec 6, 2019Updated 6 years ago
- ☆15Feb 18, 2025Updated last year
- ☆11Feb 16, 2021Updated 5 years ago
- A repository for neural representational learning of RNA secondary structures☆33Feb 13, 2020Updated 6 years ago
- DeepGraphGO: graph neural network for large-scale, multispecies protein function prediction☆36Jul 28, 2021Updated 5 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Trainable representation analysis study repository☆44Apr 5, 2022Updated 4 years ago
- PlasRAG is a deep learning-based tool specifically designed for analyzing plasmids, which serves two purposes: (1) plasmid property chara…☆10Dec 24, 2025Updated 10 months ago
- DeepAAI☆36Dec 25, 2024Updated last year
- ☆34Sep 20, 2017Updated 9 years ago
- ☆11Dec 13, 2022Updated 3 years ago
- Transformer-based protein function Annotation with joint feature-Label Embedding☆38Dec 18, 2024Updated last year
- HOTSPOT is a hierarchical host prediction tool for plasmid contigs using Transformer.☆10Apr 22, 2024Updated 2 years ago
- Graph Learning of INTER-protein contacts☆11Feb 20, 2022Updated 4 years ago
- Sequence-based protein solubility prediction using multidimensional embedding☆13Apr 19, 2021Updated 5 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- TiDE-Ab is a generative framework for the de novo design of therapeutic antibodies targeting specific epitopes.☆11Aug 31, 2026Updated 2 months ago
- Ligand binding site prediction and virtual screening☆12Oct 26, 2018Updated 8 years ago
- mPARCE: Protocol for iterative optimization of modified peptides bound to protein targets☆11Oct 19, 2022Updated 4 years ago
- ☆39Apr 2, 2026Updated 7 months ago
- the analysis script for PrismNet☆10May 17, 2020Updated 6 years ago
- Phage virion protein classifier☆14Nov 6, 2024Updated last year
- Efficient algorithms for designing orthogonal DNA sequence libraries☆13Oct 23, 2024Updated 2 years ago
- Scripts and programs for the Holt Lab's MinION desktop☆32Nov 18, 2020Updated 5 years ago
- Scripts and reference files to type Group A Streptococcus☆11Aug 31, 2026Updated 2 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Load Google's pre-trained Word2Vec model using gensim APIs☆13Jun 9, 2017Updated 9 years ago
- BioMetAll is a command line application to allow the identification of metal-binding sites in proteins from backbone preorganization.☆13Jun 9, 2026Updated 4 months ago
- ☆11Apr 2, 2024Updated 2 years ago
- A Fully Automatic Method for Predicting Contact Maps of RNAs by Evolutionary Coupling Analysis☆10Nov 6, 2023Updated 2 years ago
- GDmicro - Use GCN and Deep adaptation network to classify host disease status based on human gut microbiome data.☆11Mar 22, 2024Updated 2 years ago
- Fast and accurate protein function prediction from sequence through pretrained language model and homology-based label diffusion☆45Jul 27, 2024Updated 2 years ago
- reimplementation of mfDCA in python☆12Jul 7, 2019Updated 7 years ago
- Multi-Teacher Distillation for Protein embedding☆13May 31, 2024Updated 2 years ago
- Filter fasta/fastq(.gz) files by ID and/or sequence length☆14Feb 8, 2020Updated 6 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Predict binding affinity of ligand-protein complexes using Graph Neural Networks. The model is implemented using PyTorch Geometric and ba…☆11Nov 26, 2022Updated 3 years ago
- Contrastive learning of protein representations with graph neural networks for structural and functional annotations☆11Apr 23, 2023Updated 3 years ago
- ☆10Apr 1, 2022Updated 4 years ago
- Perl scripts for analysis RIC-seq data☆11Feb 6, 2020Updated 6 years ago
- Small Molecule Approach to RNA Targeting Binder Discovery (SMARTBind) Using Deep Learning Without Structural Input☆13Sep 2, 2026Updated 2 months ago
- Code for paper titled, "Beyond Homology Transfer: Deep Learning for Automated Annotation of Proteins". Preprint available at: http://www.…☆18Jul 26, 2017Updated 9 years ago
- PyPEF – Pythonic Protein Engineering Framework☆17Updated this week