A Fully Automatic Method for Predicting Contact Maps of RNAs by Evolutionary Coupling Analysis
☆10Nov 6, 2023Updated 3 years ago
Alternatives and similar repositories for RNAcmap
Users that are interested in RNAcmap are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Small Molecule Approach to RNA Targeting Binder Discovery (SMARTBind) Using Deep Learning Without Structural Input☆14Sep 2, 2026Updated 2 months ago
- ☆11Dec 13, 2022Updated 3 years ago
- Improved RNA Secondary Secondary Structure Prediction using Evolutionary Profile, Mutational Coupling and Two-dimensional Transfer Learni…☆37Apr 3, 2021Updated 5 years ago
- Scripts and datasets to reproduce the experiment of the paper "Exploring non-coding RNA functions with deep learning tools"☆16Mar 24, 2021Updated 5 years ago
- Precision-Recall based assessment for CAFA☆16Dec 6, 2019Updated 6 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Contrastive learning of protein representations with graph neural networks for structural and functional annotations☆11Apr 23, 2023Updated 3 years ago
- BertSNR: an interpretable deep learning framework for single nucleotide resolution identification of transcription factor binding sites b…☆13May 27, 2025Updated last year
- Evaluating RNA structure prediction using diverse thermodynamic prediction tasks and high-throughput datasets.☆18Jun 10, 2022Updated 4 years ago
- to assess structural quality of RNA using 3D CNN☆15Aug 17, 2018Updated 8 years ago
- Single-sequence and Profile-based Prediction of RNA Solvent Accessibility Using Dilated Convolution Neural Network☆13Jun 22, 2022Updated 4 years ago
- RNAdvisor is a docker-based wrapper that integrates other metrics and scoring functions for RNA 3D structure evaluation.☆19May 6, 2025Updated last year
- Code for our work on Protein-DNA binding prediction using FMs+CrossAttention☆10Oct 12, 2024Updated 2 years ago
- Expanse 101 Tutorial☆11Jun 11, 2026Updated 5 months ago
- ARES implement in PyTorch☆18Feb 27, 2024Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Visualization, comparison, and analysis of RNA secondary structures via a cross-platform GUI☆18May 19, 2025Updated last year
- GCN implementation for RNA-small molecule binding prediction. (https://academic.oup.com/nar/article/48/14/7690/5870337)☆17Nov 28, 2023Updated 2 years ago
- RNA Multiple Sequence Alignment☆53Jul 20, 2023Updated 3 years ago
- ☆29Jul 10, 2020Updated 6 years ago
- Nucleic acids Structure Prediction☆10May 21, 2020Updated 6 years ago
- Basic RNA 3D structure comparison metrics in RNA-Puzzles, including INF, DI and RMSD. It also includes `RNA_normalizer` tool in pdb_utils…☆27Dec 3, 2024Updated last year
- Learning protein structure with a differentiable simulator☆27Jul 8, 2019Updated 7 years ago
- Rapid structure-based virtual screening for RNA targets.☆31Aug 15, 2026Updated 2 months ago
- a deep learning architecture for RNA-ligand binding sites prediction☆18Jan 21, 2024Updated 2 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Visualize global properties of large RNAs using GraphViz force-directed layout.☆24Sep 7, 2023Updated 3 years ago
- RNA-ligand scoring model☆11Jul 30, 2026Updated 3 months ago
- An analysis of a new experimentally-derived nucleic acid binding chemical library☆35Jan 27, 2023Updated 3 years ago
- A platform to do RNA science☆28Mar 7, 2021Updated 5 years ago
- Analyse Nucleic Acids Structure and Simulations with baRNAba☆59Mar 20, 2024Updated 2 years ago
- Python Scripts for Bioinformatics☆15Apr 24, 2024Updated 2 years ago
- Robust RNA structure refinement by a nucleobase-centric sampling algorithm coupled with a backbone rotameric and quantum-mechanical-energ…☆20Apr 3, 2021Updated 5 years ago
- Contact map alignment☆44Feb 3, 2021Updated 5 years ago
- An end-to-end linear-time algorithm for structural alignment and conserved structure prediction of RNA homologs☆13Jun 28, 2024Updated 2 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- ☆22Jun 10, 2024Updated 2 years ago
- LncADeep is an ab initio lncRNA identification and functional annotation tool based on deep learning☆30Jun 4, 2018Updated 8 years ago
- Code, scripts, some logs and general misc. from to the RNA viruses in MetaTranscriptome discovery project.☆12Jan 5, 2023Updated 3 years ago
- Base pair-augmented SE(3)-flow matching for conditional RNA 3D structure generation☆32Aug 8, 2026Updated 3 months ago
- HiGlass track for displaying arcs between disconnected regions☆10Dec 13, 2022Updated 3 years ago
- ☆11Oct 21, 2022Updated 4 years ago
- CryoACE☆13Jul 22, 2026Updated 3 months ago
Are these results useful?