ocx-lab / OpenComplexLinks
Trainable PyTorch framework for developing protein, RNA and complex models.
☆261Updated last year
Alternatives and similar repositories for OpenComplex
Users that are interested in OpenComplex are comparing it to the libraries listed below
Sorting:
- Official code repository of < CBGBench: Fill in the Blank of Protein-Molecule Complex Binding Graph >☆311Updated 2 months ago
- AFusion: AlphaFold 3 GUI & Toolkit with Visualization☆161Updated 2 months ago
- This repository is the official code source of PPFlow: Target-Aware Peptide Design with Torsional Flow Matching (ICML2024)☆83Updated 6 months ago
- [Briefings In Bioinformatics] DrugAssist: A Large Language Model for Molecule Optimization☆136Updated 7 months ago
- Contrastive learning of structure-activity relationship☆44Updated last week
- This is the official code of the paper "MolNexTR: a generalized deep learning model for molecular image recognition"☆147Updated 3 weeks ago
- A Local Frame-based Atomistic Potential☆112Updated 2 weeks ago
- Source code for ICLR2025 paper "NExT-Mol: 3D Diffusion Meets 1D Language Modeling for 3D Molecule Generation".☆88Updated 3 months ago
- Source code for ACL 2024 paper: "ProtT3: Protein-to-Text Generation for Text-based Protein Understanding"☆47Updated last year
- [AAAI 2025] Dynamic Protein Data Bank☆773Updated 3 months ago
- ☆54Updated 8 months ago
- GENERator: A Long-Context Generative Genomic Foundation Model☆436Updated last week
- ☆167Updated last year
- Code for EMNLP2023 paper "MolCA: Molecular Graph-Language Modeling with Cross-Modal Projector and Uni-Modal Adapter".☆82Updated last year
- Electron-density-informed effective and reliable de novo molecular design and optimization with ED2Mol☆122Updated 2 months ago
- This is the official code of the paper "A Multi-Agent System Enables Versatile Information Extraction from the Chemical Literature"☆71Updated last week
- An open-source project dedicated to build foundational large language model for natural science, mainly in physics, chemistry and materia…☆245Updated 8 months ago
- SSAlign☆45Updated 2 months ago
- Few-Shot Graph Learning for Molecular Property Prediction☆138Updated 2 years ago
- ☆44Updated 8 months ago
- Variational Autoencoder (VAE)-based molecular SMILES string generator☆13Updated 7 months ago
- The official implementation of GenomeOcean.☆138Updated last month
- ⚗️ An all-in-one solution for chemical property retrieval from PubChem.☆27Updated last month
- [ICML 2025] Implementation of "GNN+ (ModernGNN): Can Classic GNNs Be Strong Baselines for Graph-level Tasks?"☆85Updated 3 months ago
- A PyTorch-based system for highly accurate drug-target interaction predictions utilizing multi-modal large language models to discern str…☆34Updated last year
- ☆42Updated 2 years ago
- Code and Data for the paper: Multi-level Protein Structure Pre-training with Prompt Learning [ICLR 2023]☆33Updated 2 years ago
- This repo contains the codes for our paper "End-to-End Full-Atom Antibody Design"☆121Updated 8 months ago
- This repo contains the codes for our paper Conditional Antibody Design as 3D Equivariant Graph Translation.☆99Updated 2 years ago
- [AAAI 2025] CoPRA: Bridging Cross-domain Pretrained Sequence Models with Complex Structures for Protein-RNA Binding Affinity Prediction☆32Updated 11 months ago