Alternatives and similar repositories for bioruby-samtools

Users that are interested in bioruby-samtools are comparing it to the libraries listed below

• vcflib / bio-vcf
  Smart VCF parser DSL
  ☆83Updated 3 years ago
• blahah / transrate
  Understand your transcriptome assembly
  ☆102Updated last year
• tanghaibao / trimReads
  Utility programs to trim or sort Illumina reads with adapter sequences
  ☆15Updated 12 years ago
• danmaclean / gee_fu
  An extensible Ruby on Rails web-service application and database for visualising HTGS data
  ☆18Updated 11 years ago
• gt1 / biobambam
  Tools for bam file processing
  ☆55Updated 10 years ago
• mills-lab / svelter
  Approach to identify simple and complex structural genomic rearrangements using a randomized approach
  ☆21Updated 6 years ago
• aquaskyline / LRSIM
  10x Genomics Reads Simulator
  ☆45Updated last year
• chmille4 / Scribl
  HTML5 canvas genomic graphics library
  ☆76Updated 6 years ago
• walaj / bxtools
  Tools for analyzing 10X Genomics data
  ☆42Updated 6 years ago
• relipmoc / skewer
  ☆95Updated 3 years ago
• pachterlab / metakallisto
  Using kallisto for metagenomic analysis
  ☆49Updated 8 years ago
• nanoporetech / wub
  Tools and software library developed by the ONT Applications group
  ☆63Updated 4 years ago
• gogetdata / ggd-recipes
  conda recipes for genomic data
  ☆84Updated 4 years ago
• cboursnell / transfuse
  Merge transcriptome assemblies
  ☆31Updated 9 years ago
• GenomiqueENS / dockerfiles
  ☆82Updated 3 years ago
• cc2qe / vawk
  An awk-like VCF parser
  ☆56Updated last year
• idekerlab / KEGGscape
  A Cytoscape app for importing KGML(KEGG pathway XML)
  ☆24Updated 7 months ago
• grenaud / deML
  Maximum likelihood demultiplexing
  ☆47Updated 8 months ago
• ccgd-profile / BreaKmer
  A method to identify structural variation from sequencing data in target regions
  ☆32Updated 5 years ago
• najoshi / sabre
  ☆63Updated 4 years ago
• scottgigante / picopore
  A tool to reduce the size of Oxford Nanopore Technologies' datasets without losing information
  ☆30Updated last year
• MG-RAST / pipeline
  The MG-RAST pipeline
  ☆23Updated 2 years ago
• fstrozzi / bioruby-pipengine
  An ultra light YAML-based pipeline execution engine
  ☆20Updated 8 years ago
• dpryan79 / libBigWig
  A C library for handling bigWig files
  ☆81Updated 9 months ago
• mgymrek / pybamview
  Browser based application for viewing bam alignments
  ☆56Updated 8 years ago
• bow / crimson
  Bioinformatics tool outputs converter to JSON or YAML
  ☆35Updated 4 months ago
• s-andrews / BamQC
  Mapped QC analysis program
  ☆44Updated 7 years ago
• Yandell-Lab / taxonomer_0.5
  full taxonomer cython repository
  ☆22Updated 5 years ago
• COMBINE-lab / RapMap
  Rapid sensitive and accurate read mapping via quasi-mapping
  ☆89Updated 5 years ago
• arq5x / bedtools-protocols
  ☆78Updated 11 years ago