Alternatives and similar repositories for bioruby-samtools:

Users that are interested in bioruby-samtools are comparing it to the libraries listed below

• gt1 / biobambam
  Tools for bam file processing
  ☆55Updated 9 years ago
• mills-lab / svelter
  Approach to identify simple and complex structural genomic rearrangements using a randomized approach
  ☆21Updated 6 years ago
• danmaclean / gee_fu
  An extensible Ruby on Rails web-service application and database for visualising HTGS data
  ☆18Updated 10 years ago
• mcfrith / last-rna
  ☆49Updated 2 years ago
• Jverma / GATK-pipeline
  A shell script which implements GATK pipeline for variant calling.
  ☆15Updated 10 years ago
• ccgd-profile / BreaKmer
  A method to identify structural variation from sequencing data in target regions
  ☆31Updated 4 years ago
• vcflib / bio-vcf
  Smart VCF parser DSL
  ☆82Updated 2 years ago
• Genomon-Project / GenomonSV
  structure detection program
  ☆17Updated 3 months ago
• aquaskyline / LRSIM
  10x Genomics Reads Simulator
  ☆45Updated last year
• fstrozzi / bioruby-pipengine
  An ultra light YAML-based pipeline execution engine
  ☆20Updated 7 years ago
• Yandell-Lab / taxonomer_0.5
  full taxonomer cython repository
  ☆22Updated 5 years ago
• tanghaibao / trimReads
  Utility programs to trim or sort Illumina reads with adapter sequences
  ☆15Updated 11 years ago
• MG-RAST / pipeline
  The MG-RAST pipeline
  ☆24Updated 2 years ago
• blahah / transrate
  Understand your transcriptome assembly
  ☆101Updated 11 months ago
• scottgigante / picopore
  A tool to reduce the size of Oxford Nanopore Technologies' datasets without losing information
  ☆31Updated last year
• lh3 / sgdp-fermi
  FermiKit small variant calls for public SGDP samples
  ☆17Updated 8 years ago
• bcgsc / pavfinder
  Post Assembly Variants Finder
  ☆18Updated 2 years ago
• Ensembl / Bio-DB-HTS
  Git repo for Bio::HTS module on CPAN, providing Perl links into HTSlib
  ☆24Updated last month
• ChristopherWilks / snaptron
  fast webservices based query tool for large sets of genomic features
  ☆25Updated 2 years ago
• ljdursi / mergevcf
  Python package and routines for merging VCF files
  ☆29Updated 3 years ago
• EI-CoreBioinformatics / portcullis
  Splice junction analysis and filtering from BAM files
  ☆39Updated 2 years ago
• robsyme / nextflow-annotate
  Workflows I find helpful for fungal genome annotation
  ☆20Updated last year
• brentp / bigly
  a pileup library that embraces the huge
  ☆42Updated 4 years ago
• vpc-ccg / calib
  Calib clusters barcode tagged paired-end reads based on their barcode and sequence similarity.
  ☆38Updated last year
• quinlan-lab / vcf2db
  create a gemini-compatible database from a VCF
  ☆56Updated 4 years ago
• walaj / VariantBam
  Filtering and profiling of next-generational sequencing data using region-specific rules
  ☆75Updated last year
• kojix2 / ruby-minimap2
  Powerful long read aligner for Ruby
  ☆14Updated last month
• mozack / abra
  Assembly Based ReAligner
  ☆72Updated 6 years ago
• chmille4 / Scribl
  HTML5 canvas genomic graphics library
  ☆76Updated 5 years ago