rjpbonnal / bioruby-samtoolsLinks
Porting of samtools-ruby to BioRuby. Binder of samtools for ruby, on the top of FFI -from original project-
☆33Updated 5 years ago
Alternatives and similar repositories for bioruby-samtools
Users that are interested in bioruby-samtools are comparing it to the libraries listed below
Sorting:
- Utility programs to trim or sort Illumina reads with adapter sequences☆15Updated 11 years ago
- An ultra light YAML-based pipeline execution engine☆20Updated 7 years ago
- Tools for bam file processing☆55Updated 10 years ago
- Smart VCF parser DSL☆82Updated 3 years ago
- Ruby UCSC API: An API for the UCSC Genome Database☆19Updated 2 years ago
- full taxonomer cython repository☆22Updated 5 years ago
- Approach to identify simple and complex structural genomic rearrangements using a randomized approach☆21Updated 6 years ago
- Filtering and profiling of next-generational sequencing data using region-specific rules☆77Updated last year
- A method to identify structural variation from sequencing data in target regions☆32Updated 4 years ago
- 10x Genomics Reads Simulator☆45Updated last year
- Git repo for Bio::HTS module on CPAN, providing Perl links into HTSlib☆24Updated 5 months ago
- A shell script which implements GATK pipeline for variant calling.☆15Updated 10 years ago
- Merge transcriptome assemblies☆31Updated 8 years ago
- Run Picard on BAM files and collate 90 metrics into one file.☆41Updated 7 years ago
- ☆63Updated 4 years ago
- create a gemini-compatible database from a VCF☆56Updated 4 years ago
- Python package and routines for merging VCF files☆29Updated 4 years ago
- fast webservices based query tool for large sets of genomic features☆25Updated last month
- Understand your transcriptome assembly☆102Updated last year
- Bioinformatics tool outputs converter to JSON or YAML☆36Updated 2 weeks ago
- Preprocessing tools for unique molecular index (UMI) sequencing reads☆31Updated 2 years ago
- Structural Variant Prediction Viewer☆34Updated 7 years ago
- ☆49Updated 2 years ago
- SV detection from paired end reads mapping☆38Updated 14 years ago
- Assembly Based ReAligner☆74Updated 7 years ago
- Tools and software library developed by the ONT Applications group☆63Updated 4 years ago
- a pileup library that embraces the huge☆43Updated 4 years ago
- An illumina paired-end and mate-pair short read simulator. This project attempts to model as many of the quirks that exist in Illumina da…☆66Updated 10 years ago
- Tools for analyzing 10X Genomics data☆42Updated 6 years ago
- structure detection program☆17Updated 7 months ago