Porting of samtools-ruby to BioRuby. Binder of samtools for ruby, on the top of FFI -from original project-
☆34Sep 20, 2019Updated 6 years ago
Alternatives and similar repositories for bioruby-samtools
Users that are interested in bioruby-samtools are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A ruby API to the Ensembl database☆40Aug 18, 2011Updated 14 years ago
- HTSlib bindings for Ruby☆11Mar 5, 2026Updated 3 weeks ago
- This plugins is intended to wrap the common software used for Next Generation Sequencing data☆28Jan 18, 2023Updated 3 years ago
- NO LONGER MAINTAINED. Ruby bindings for using Nvidia CUDA☆60Aug 8, 2012Updated 13 years ago
- DBCLS RDFizing database guidelines☆16Aug 31, 2024Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- Streamable FASTA parser.☆14Nov 19, 2019Updated 6 years ago
- 16S rRNA database☆13Nov 29, 2018Updated 7 years ago
- Microbiome Classifier Pipeline for Pacific Biosciences 16s Data☆11Jan 22, 2024Updated 2 years ago
- blast, shmlast☆21Oct 5, 2020Updated 5 years ago
- Specific Transposable Element Aligner (HERV-K)☆16Sep 12, 2019Updated 6 years ago
- Identify differentially expressed k-mers between RNA-Seq datasets☆11Mar 1, 2021Updated 5 years ago
- A varitation graph tool☆10Dec 23, 2019Updated 6 years ago
- ☆18Apr 17, 2025Updated 11 months ago
- AlignerBoost is a generalized software toolkit for boosting Next-Gen sequencing mapping precision using a Bayesian based mapping quality …☆11Mar 1, 2022Updated 4 years ago
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- An accurate and ultra-fast adapter and quality trimming program for Illumina Next-Generation Sequencing (NGS) data.☆38Oct 9, 2025Updated 5 months ago
- De novo assembly of nanopore reads using nextflow☆20Aug 5, 2020Updated 5 years ago
- An ultra light YAML-based pipeline execution engine☆20Aug 30, 2017Updated 8 years ago
- A command-line finder with fzf☆15Nov 7, 2015Updated 10 years ago
- ☆39Jul 3, 2025Updated 8 months ago
- A program for summarising CpG methylation patterns☆20Sep 9, 2016Updated 9 years ago
- An alignment-free approach to estimating exon-inclusion ratios without a reference transcriptome☆10Jan 25, 2019Updated 7 years ago
- Read contamination removal☆25Jan 24, 2024Updated 2 years ago
- An extensible Ruby on Rails web-service application and database for visualising HTGS data☆18Mar 7, 2014Updated 12 years ago
- Wordpress hosting with auto-scaling on Cloudways • AdFully Managed hosting built for WordPress-powered businesses that need reliable, auto-scalable hosting. Cloudways SafeUpdates now available.
- S3proxy provides a simple REST-interface to files and keys stored on the AWS S3 service.☆13Apr 2, 2014Updated 11 years ago
- This is *NOT* the official repository of samtools.☆49Jun 9, 2017Updated 8 years ago
- SCOUP is a probabilistic model to analyze single-cell expression data during differentiation☆10Apr 20, 2017Updated 8 years ago
- 🏔 coverage extraction from BAM/CRAM files, supporting targets 📊☆65Mar 20, 2026Updated last week
- ☆14Aug 30, 2025Updated 7 months ago
- Rust implementation of Flavia95's GFAtoVCF☆16Jan 17, 2022Updated 4 years ago
- ☆11Jan 5, 2021Updated 5 years ago
- Rapid sensitive and accurate read mapping via quasi-mapping☆90Jun 5, 2020Updated 5 years ago
- Mapping-free variant caller for short-read Illumina data☆20Apr 2, 2020Updated 5 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- NGS Data Analysis Textbook Version 2 (Disease Genome Analysis)☆43May 7, 2021Updated 4 years ago
- Python language bindings for bwa☆12Mar 2, 2026Updated 3 weeks ago
- Integrated platform for unifying scientific workflow management and graph databases for transcriptome data analysis.☆10Oct 19, 2018Updated 7 years ago
- rxls views for Rails 3☆30Mar 1, 2023Updated 3 years ago
- SkewC a novel quality-assessment method to identify poor quality single-cells in scRNA-seq experiments. The method relies on the measure …☆10Aug 2, 2023Updated 2 years ago
- ODBC binding for Ruby☆20Jun 27, 2024Updated last year
- Stupid Simple Structural Variant View☆25Nov 21, 2016Updated 9 years ago