Alternatives and similar repositories for bioruby-samtools

Users that are interested in bioruby-samtools are comparing it to the libraries listed below

• vcflib / bio-vcf
  Smart VCF parser DSL
  ☆83Updated 3 years ago
• mills-lab / svelter
  Approach to identify simple and complex structural genomic rearrangements using a randomized approach
  ☆21Updated 6 years ago
• blahah / transrate
  Understand your transcriptome assembly
  ☆102Updated last year
• gt1 / biobambam
  Tools for bam file processing
  ☆55Updated 10 years ago
• nextflow-io / doom
  A Nextflow pipeline to play Doom
  ☆10Updated 8 months ago
• MG-RAST / pipeline
  The MG-RAST pipeline
  ☆23Updated 2 years ago
• cboursnell / transfuse
  Merge transcriptome assemblies
  ☆31Updated 8 years ago
• aquaskyline / LRSIM
  10x Genomics Reads Simulator
  ☆45Updated last year
• ccgd-profile / BreaKmer
  A method to identify structural variation from sequencing data in target regions
  ☆32Updated 5 years ago
• chmille4 / Scribl
  HTML5 canvas genomic graphics library
  ☆76Updated 6 years ago
• tjparnell / biotoolbox
  Tools for querying and analysis of genomic data
  ☆27Updated 3 weeks ago
• tanghaibao / trimReads
  Utility programs to trim or sort Illumina reads with adapter sequences
  ☆15Updated 12 years ago
• najoshi / sabre
  ☆63Updated 4 years ago
• pachterlab / metakallisto
  Using kallisto for metagenomic analysis
  ☆49Updated 8 years ago
• jstjohn / SimSeq
  An illumina paired-end and mate-pair short read simulator. This project attempts to model as many of the quirks that exist in Illumina da…
  ☆67Updated 11 years ago
• TGAC / NanoOK
  Analysis tool for Nanopore sequencing data
  ☆34Updated 6 years ago
• relipmoc / skewer
  ☆95Updated 3 years ago
• quinlan-lab / vcf2db
  create a gemini-compatible database from a VCF
  ☆56Updated 4 years ago
• Yandell-Lab / taxonomer_0.5
  full taxonomer cython repository
  ☆22Updated 5 years ago
• scottgigante / picopore
  A tool to reduce the size of Oxford Nanopore Technologies' datasets without losing information
  ☆30Updated last year
• s-andrews / BamQC
  Mapped QC analysis program
  ☆44Updated 7 years ago
• robsyme / nextflow-annotate
  Workflows I find helpful for fungal genome annotation
  ☆21Updated 2 years ago
• ekg / bamaddrg
  adds sample names and read-group (RG) tags to BAM alignments
  ☆51Updated 4 years ago
• mateidavid / fast5
  A C++ header-only library for reading Oxford Nanopore Fast5 files
  ☆53Updated 3 years ago
• fstrozzi / bioruby-pipengine
  An ultra light YAML-based pipeline execution engine
  ☆20Updated 8 years ago
• nanoporetech / wub
  Tools and software library developed by the ONT Applications group
  ☆63Updated 4 years ago
• GenomiqueENS / dockerfiles
  ☆82Updated 3 years ago
• mattloose / flowcellvis
  Animated GIF of flow cell performance from sequencing summary file.
  ☆13Updated 7 years ago
• bow / crimson
  Bioinformatics tool outputs converter to JSON or YAML
  ☆35Updated 3 months ago
• mozack / abra
  Assembly Based ReAligner
  ☆74Updated 7 years ago