fstrozzi / bioruby-pipengineLinks
An ultra light YAML-based pipeline execution engine
☆20Updated 8 years ago
Alternatives and similar repositories for bioruby-pipengine
Users that are interested in bioruby-pipengine are comparing it to the libraries listed below
Sorting:
- A WGS de novo assembler based on the FMD-index for large genomes☆74Updated 11 years ago
- An Oxford Nanopore Basecaller☆70Updated 4 years ago
- a string to graph aligner☆41Updated 9 years ago
- ☆73Updated 6 years ago
- An illumina paired-end and mate-pair short read simulator. This project attempts to model as many of the quirks that exist in Illumina da…☆67Updated 11 years ago
- This pipeline has moved! Please see:☆11Updated 7 years ago
- Error correction for Oxford Nanopore data☆47Updated 4 years ago
- A C++ header-only library for reading Oxford Nanopore Fast5 files☆53Updated 3 years ago
- Smart VCF parser DSL☆83Updated 3 years ago
- Ococo: the first online variant and consensus caller. Call genomic consensus directly from an unsorted SAM/BAM stream.☆46Updated 6 years ago
- An integrated high performance bioinformatics toolkit☆23Updated 6 years ago
- find large indels (in the blind spot between GATK/freebayes and SV callers)☆39Updated 7 years ago
- CheckQC inspects the content of an Illumina runfolder and determines if it passes a set of quality criteria☆28Updated 2 months ago
- 10x Genomics Reads Simulator☆45Updated last year
- ☆26Updated 4 years ago
- Bioinformatics tool outputs converter to JSON or YAML☆35Updated 3 months ago
- A metagenomic and isolate assembly and analysis pipeline built with AMOS☆94Updated 7 years ago
- a wee tool for random access into BGZF files.☆85Updated 7 years ago
- Analysis tool for Nanopore sequencing data☆34Updated 6 years ago
- Squeakr: An Exact and Approximate k -mer Counting System☆85Updated 7 months ago
- A tool to reduce the size of Oxford Nanopore Technologies' datasets without losing information☆30Updated last year
- Assembly Based ReAligner☆74Updated 7 years ago
- Standalone C library for assembling Illumina short reads in small regions☆72Updated 2 years ago
- Estimating k-mer coverage histogram of genomics data☆76Updated last year
- adds sample names and read-group (RG) tags to BAM alignments☆51Updated 4 years ago
- chitin: an awful shell for awful bioinformaticians☆61Updated 5 years ago
- Porting of samtools-ruby to BioRuby. Binder of samtools for ruby, on the top of FFI -from original project-☆33Updated 6 years ago
- De novo genome assembly and multisample variant calling☆112Updated 6 years ago
- Scripts for implementing read until and other examples.☆32Updated 5 years ago
- Antibiotic resistance predictions in minutes on a laptop☆50Updated 6 years ago