A shell script which implements GATK pipeline for variant calling.
☆15Nov 30, 2014Updated 11 years ago
Alternatives and similar repositories for GATK-pipeline
Users that are interested in GATK-pipeline are comparing it to the libraries listed below
Sorting:
- Exploration of controlled loss of quality values for compressing CRAM files☆36Feb 23, 2023Updated 3 years ago
- ☆19Jun 16, 2023Updated 2 years ago
- circos pipeline☆20May 8, 2021Updated 4 years ago
- Lu Lab @ Tsinghua University☆19Nov 11, 2025Updated 3 months ago
- Documentation for Evolview☆29Nov 27, 2021Updated 4 years ago
- Single-cell Hi-C data analysis toolbox☆27Aug 13, 2021Updated 4 years ago
- hyb: a bioinformatics pipeline for the analysis of CLASH (crosslinking, ligation and sequencing of hybrids) data☆13Jul 12, 2024Updated last year
- Comprehensive genome-wide visualization of absolute copy number and copy neutral variations☆29Apr 10, 2019Updated 6 years ago
- The wiki repo, with pull request enabled, for the rnaseq_tutorial☆26May 7, 2020Updated 5 years ago
- ☆10Mar 6, 2025Updated last year
- Taxon-aware analysis of clustered protein sequences☆31Jul 1, 2024Updated last year
- A simple variant calling and annotation pipeline using BWA, GATK and ENSEMBL. This version of the pipeline uses the Rubra/Ruffus framewor…☆34Mar 18, 2014Updated 11 years ago
- Pipeline for Nanopore sequencing: demultiplexing, variant calling, and quality visualization with error handling.☆11Jan 25, 2026Updated last month
- Designs for 3D printed parts that were developed in the Zhuang Lab.☆11Dec 2, 2020Updated 5 years ago
- Perl scripts for analysis RIC-seq data☆11Feb 6, 2020Updated 6 years ago
- A rapid and low-memory multiple-genome aligner for closely related genomes☆23Sep 3, 2025Updated 6 months ago
- ☆10Jun 25, 2021Updated 4 years ago
- Chromosome Scale Assembler: A high-throughput chromosome scale genome assembly pipeline for vertebrate genomes☆10Oct 16, 2024Updated last year
- Mutation Spectra Analysis☆10Mar 15, 2018Updated 7 years ago
- R package wrapper for Istanbul Municipality Open Data Portal☆10Apr 24, 2021Updated 4 years ago
- the analysis script for PrismNet☆10May 17, 2020Updated 5 years ago
- Multiplexed Shotgun Genotyping☆11Feb 15, 2022Updated 4 years ago
- scripts for analyzing data of macrophage development in human☆10Dec 8, 2019Updated 6 years ago
- Repository of common bioinformatics scripts☆39Sep 21, 2021Updated 4 years ago
- A GA4GH Draft Beacon implementation☆11Oct 23, 2015Updated 10 years ago
- Repository containing the scripts regarding analyses in Zufferey & Tavernari et al.☆10Feb 22, 2021Updated 5 years ago
- ☆11Mar 13, 2012Updated 13 years ago
- Course material for CSAMA 2015: Statistics and Computing in Genome Data Science☆11Mar 15, 2023Updated 2 years ago
- Gene Prediction using MAKER, CEGMA, SNAP, GENEMARK & AUGUSTUS☆10Jul 20, 2017Updated 8 years ago
- Package to design primers for MutaSeq and related methods☆11Jan 15, 2021Updated 5 years ago
- Python implementation of TEISER also capable of using SHAPE structural probing data☆12Jan 7, 2025Updated last year
- Hybrid method based on a variable-order de bruijn Graph for the error Correction of Long Reads☆11Jan 20, 2021Updated 5 years ago
- misFinder: Identify mis-assemblies in an unbiased manner using reference and paired-end reads☆10Oct 17, 2015Updated 10 years ago
- AlphaImpute2: pedigree- and population-based genotype imputation☆12Dec 19, 2025Updated 2 months ago
- For live demo, see http://lh3lh3.users.sourceforge.net/bioseq.shtml☆39Aug 8, 2019Updated 6 years ago
- Computational analyses of WGS, mate-pair, RNA-seq, Hi-C and Capture-C data from highly rearranged balancer chromosomes in Drosophila mela…☆10Sep 25, 2019Updated 6 years ago
- Python script for calling SNPs, MNPs, and indels in mitochondrial DNA.☆10Apr 19, 2016Updated 9 years ago
- polysat 1.7: tools for polyploid microsatellite analysis☆12Dec 20, 2024Updated last year
- Text Only Genome Viewer!☆233Updated this week