Tools to explore Minimum Decycling Sets (MDSs) of the de Bruijn graph
β12Sep 11, 2025Updated last year
Alternatives and similar repositories for mdsscope
Users that are interested in mdsscope are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Homology-based ANI estimation at unprecedented scalesπ¦β25Oct 4, 2026Updated 2 weeks ago
- Fast and exact gap-affine partial order alignmentβ71Sep 16, 2026Updated last month
- Drug Resistance Prediction with Reference Graphsβ21Oct 23, 2025Updated 11 months ago
- Parallel Construction of Suffix Arrays in Rustβ26Updated this week
- rust tool to choose the best read alignment between haploids to a diploid reference genomeβ21Oct 1, 2026Updated 2 weeks ago
- Deploy on Railway without the complexity - Free Credits Offer β’ AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Mycobacterium tuberculosis complex lineage typingβ11Jun 22, 2025Updated last year
- RabbitMash: an efficient highly optimized implementation of Mash.β20Oct 28, 2023Updated 2 years ago
- Statistics and analysis for variation graphsβ56Dec 17, 2024Updated last year
- Mycobacterial pipelineβ11Sep 11, 2025Updated last year
- Just another minhash implementation.β13Sep 14, 2026Updated last month
- Ultrafast identification of signature sequences in microbial genomesβ21Oct 9, 2026Updated last week
- β12Aug 5, 2026Updated 2 months ago
- VolcanoSV enables accurate and robust structural variant calling in diploid genomes from single-molecule long read sequencingβ10Sep 8, 2026Updated last month
- A plant organellar Graphical Fragment Assembly toolkitβ17Sep 24, 2026Updated 3 weeks ago
- Managed Kubernetes at scale on DigitalOcean β’ AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Fast and Memory Efficient Genome Sketching via HyperLogLog, HyperMinHash, UltraLogLog and ExaLogLogβ23Oct 11, 2026Updated last week
- Space-efficient pseudoalignment with a colored de Bruijn graphβ58Mar 13, 2025Updated last year
- Kmer Analysis of Pileups for Genotypingβ43Jul 16, 2026Updated 3 months ago
- Catalogue of pairwise alignment algorithms and benchmarksβ25Jan 6, 2026Updated 9 months ago
- Fast, Cache-Efficient, and Scalable Queries on Pangenomesβ46Mar 9, 2026Updated 7 months ago
- linearize and simplify variation graphs using blocked partial order alignmentβ67Aug 21, 2026Updated last month
- Enumerating bubbles in pangenome graphsβ16Oct 9, 2026Updated last week
- One pure-Rust binary that finds genes in phages, viruses, giant viruses, crassphages, bacteria, archaea, eukaryotes β and raw sequencing β¦β36Updated this week
- β17Aug 8, 2025Updated last year
- Managed hosting for WordPress and PHP on Cloudways β’ AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Computation of average nucleotide identity with the use of MMseqs2β24Dec 11, 2024Updated last year
- Validation of sycnmers compared to minimizersβ11May 10, 2025Updated last year
- PyO3 bindings and Python interface to skani, a method for fast genomic identity calculation using sparse chaining.β29Aug 20, 2025Updated last year
- β‘οΈ π§¬ Fulgor is a fast and space-efficient colored de Bruijn graph index.β59Sep 18, 2026Updated last month
- plane sweep filtering genome alignmentsβ24Sep 28, 2026Updated 3 weeks ago
- Compute bottom-s sketches and s-buckets sketches, using simd-minimizers crate.β21Aug 26, 2026Updated last month
- Dividing heterogeneous long-read sequencing into groups with de Bruijn graphsβ48Sep 18, 2026Updated last month
- Accelerated short-read alignment, derived from bwa-mem2 β drop-in replacement with correctness fixes, performance improvements, single-biβ¦β55Updated this week
- Rapid estimation of phylogenetic trees using sketchingβ13Feb 18, 2025Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer β’ AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- online variation graph inductionβ12Oct 21, 2025Updated 11 months ago
- β27Oct 9, 2026Updated last week
- Viral genome coverage evaluation for metagenomic diagnosticsβ27Jul 9, 2026Updated 3 months ago
- Mapping sequencing data to De Bruijn graphs, fastβ38Aug 31, 2026Updated last month
- Pipeline for analyzing rare mutations in metagenome-assembled genomesβ10Apr 4, 2025Updated last year
- How many distinct k-mers are there in a sequence?β11Feb 4, 2026Updated 8 months ago
- Improved long-read assembly by preserving contained readsβ29Aug 22, 2024Updated 2 years ago