rishavray / PILFER
piRNA cluster prediction and analysis framework
☆8Updated 6 years ago
Alternatives and similar repositories for PILFER:
Users that are interested in PILFER are comparing it to the libraries listed below
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆39Updated 3 years ago
- an R/Shiny application for interactive creation of non-circular plots of whole genomes☆45Updated 2 years ago
- Analysis of TE contribution to features (transcripts or simple features). Includes utils to test enrichment.☆26Updated 5 years ago
- BS-Seeker3: An Ultra-fast, Versatile Pipeline for Mapping Bisulfite-treated Reads.☆27Updated 5 years ago
- A package for quantifying transposable elements at a locus level for RNAseq datasets.☆25Updated 2 months ago
- ☆22Updated 4 months ago
- ☆27Updated last week
- tools to find circRNAs in RNA-seq data☆42Updated 7 years ago
- microRNA PREdiction From small RNA-seq data☆29Updated 7 years ago
- Pipeline to identify isoforms from full-length cDNA sequencing data☆24Updated 11 months ago
- Genomic Association Tester☆31Updated last year
- Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.☆34Updated 2 years ago
- ☆19Updated 8 months ago
- 4C-seq processing pipeline☆23Updated last month
- Arabidopsis RNA_-seq downstream analysis shiny app☆30Updated 5 years ago
- Snakemake based pipeline for RNA-Seq analysis☆31Updated 5 years ago
- ENCODE long read RNA-seq pipeline☆47Updated 2 years ago
- SQANTI2 is now replaced by SQANTI3. Please go to: https://github.com/ConesaLab/SQANTI3☆38Updated 4 years ago
- Somatic point mutation caller☆28Updated 4 months ago
- ☆23Updated 3 years ago
- Analysis of transposable elements☆10Updated last week
- Splice junction analysis and filtering from BAM files☆40Updated 3 years ago
- For biological deep sequencing data. Decompose a UCSC knownGenes/Ensembl GTF file into transcript regions (i.e. exons, introns, UTRs and…☆35Updated last year
- Merge fastq files split over lanes☆20Updated 7 years ago
- Rocking R at UMCCR☆9Updated 4 years ago
- Detection of differential translated genes using Ribo-seq☆15Updated 4 years ago
- Long-read Isoform Quantification and Analysis☆39Updated last month
- toolbox for analysing BS-seq data, advance features in SNV, ASM and DMR☆62Updated last year
- An R interface to the MEME Suite☆50Updated 6 months ago
- A collection of tools to deal with Bisulfite-seq/NOMe-seq (SNP/Methylation calling: BisSNP; HMM segmentation: DMNTools; Visualization/Clu…☆31Updated 3 years ago