Alternatives and similar repositories for gwas-analysis

Users that are interested in gwas-analysis are comparing it to the libraries listed below

• fastlmm / FaST-LMM
  Python version of Factored Spectrally Transformed Linear Mixed Models
  ☆53Updated 5 months ago
• broadinstitute / wdl-runner
  Easily run WDL workflows on GCP
  ☆14Updated 4 years ago
• ajaynadig / bhr
  Suite of heritability and genetic correlation estimation tools for exome-sequencing data
  ☆35Updated 8 months ago
• biocommons / bioutils
  provides common tools and lookup tables used primarily by the hgvs and uta packages
  ☆23Updated 2 months ago
• broadinstitute / genepy
  Genepy is an open source utils package covering a range of useful functions for large scale genomics data analysis in python
  ☆21Updated 2 years ago
• kundajelab / training_camp
  Genetics training camp
  ☆21Updated 5 years ago
• sgkit-dev / bio2zarr
  Convert bioinformatics file formats to Zarr
  ☆39Updated 5 months ago
• diazale / 1KGP_dimred
  Interactive demonstration of how to use PCA, t-SNE, and UMAP on genotype data from the Thousand Genome Project.
  ☆20Updated 5 years ago
• YeoLab / qtools
  qtools has helper functions to submit jobs to compute clusters (PBS on TSCC, SGE on oolite) from within Python
  ☆21Updated 2 years ago
• czbiohub-sf / cerebra
  A tool for fast and accurate summarizing of variant calling format (VCF) files
  ☆61Updated 2 years ago
• pachterlab / sleuth_paper_analysis
  Code to reproduce analyses from the sleuth paper
  ☆16Updated 6 years ago
• CBIIT / nci-webtools-dceg-linkage
  LDlink is a suite of web-based applications designed to easily and efficiently interrogate linkage disequilibrium in population groups. E…
  ☆24Updated this week
• COMBINE-lab / pyroe
  ☆16Updated 10 months ago
• EliLillyCo / pytest-wdl
  WDL plugin for pytest
  ☆48Updated 2 years ago
• gmiaslab / pyiomica
  PyIOmica (pyiomica) is a Python package for omics analyses.
  ☆16Updated last month
• Joyvalley / GWAS_Flow
  GPU accelerated GWAS framework based on TensorFlow
  ☆34Updated 2 years ago
• gmcvicker / draw_genes
  A flexible python program for generating figures from regions of the genome.
  ☆13Updated 6 years ago
• marcos-diazg / musica
  MuSiCa - Mutational Signatures in Cancer
  ☆23Updated last year
• statgen / savvy
  Interface to various variant calling formats.
  ☆30Updated last year
• kundajelab / genomelake
  Simple and efficient access to genomic data for deep learning models.
  ☆42Updated 5 years ago
• lemieuxl / pyplink
  Python module to read binary Plink files.
  ☆17Updated last year
• bioforensics / rsidx
  Library for indexing VCF files for random access searches by rsID
  ☆17Updated 3 months ago
• epiviz / epiviz
  EpiViz is a scientific information visualization tool for genetic and epigenetic data, used to aid in the exploration and understanding o…
  ☆71Updated 2 years ago
• cannin / snp_plotter
  snp.plotter is an R package that creates publishable-quality plots of p-values using single SNP and/or haplotype data.
  ☆20Updated last year
• HaoKeLab / ensembleCNV
  ☆21Updated 4 years ago
• statgen / encore
  Encore Analysis Server
  ☆13Updated this week
• genepattern / genepattern-notebook
  Platform for integrating genomic analysis with Jupyter Notebooks.
  ☆44Updated 3 months ago
• GSEA-MSigDB / gsea-desktop
  Gene Set Enrichment Analysis (GSEA) is a computational method that determines whether an a priori defined set of genes shows statisticall…
  ☆38Updated 8 months ago
• tgen / CovGen
  Creates a target specific exome_full192.coverage.txt file required by MutSig
  ☆21Updated 4 years ago
• DataBiosphere / terra-docker
  ☆32Updated 2 months ago