Alternatives and similar repositories for pyiomica:

Users that are interested in pyiomica are comparing it to the libraries listed below

• Shamir-Lab / NEMO
  ☆16Updated 4 years ago
• stracquadaniolab / pygna
  A Python package for gene network analysis
  ☆32Updated 2 years ago
• pachterlab / BBB
  Bioinformatics for Benched Biologists
  ☆22Updated 4 years ago
• Kayla-Morrell / CreateAPackage
  The vignette provided has a basic sketch of the steps we interactively will go through to build a package with devtools, explains version…
  ☆11Updated 4 years ago
• broadinstitute / genepy
  Genepy is an open source utils package covering a range of useful functions for large scale genomics data analysis in python
  ☆20Updated last year
• vals / python-gprofiler
  ☆12Updated 5 years ago
• francescojm / CELLector
  ☆12Updated 4 months ago
• sbenz / Paradigm
  PAthway Representation and Analysis by Direct Inference on Graphical Models
  ☆44Updated 6 years ago
• cole-trapnell-lab / cicero
  ☆12Updated 11 months ago
• greenelab / generic-expression-patterns
  Distinguishing between generic and experiment-specific gene expression signals.
  ☆12Updated last year
• fperraudeau / singlecellworkflow
  Tutorial for the analysis of scRNA-seq data in R
  ☆18Updated 6 years ago
• COMBINE-lab / pyroe
  ☆16Updated 3 weeks ago
• czbiohub-sf / molecular-cross-validation
  Calibrate and compare methods for denoising single-cell RNA-seq data
  ☆2Updated 4 years ago
• Bioconductor / BuildABiocWorkshop
  Template for building a bioconductor workshop package using github actions
  ☆19Updated 6 months ago
• loosolab / UROPA
  Universal RObust Peak Annotator
  ☆15Updated last year
• opentargets / genetics-gold-standards
  GWAS gold standards repository
  ☆30Updated last year
• mikelove / zinbwave-deseq2
  Workflow for ZINB-WaVE + DESeq2 intergration for single-cell RNA-seq
  ☆31Updated 4 years ago
• HenrikBengtsson / aroma.affymetrix
  🔬 R package: Analysis of Large Affymetrix Microarray Data Sets
  ☆10Updated 11 months ago
• flo-compbio / gopca
  GO-PCA: An Unsupervised Method to Explore Gene Expression Data Using Prior Knowledge
  ☆14Updated 7 years ago
• GRealesM / RapidoPGS
  A rapido and lightweight method for PGS computation
  ☆13Updated 4 months ago
• sarbal / EGAD
  Gene network analysis
  ☆19Updated 2 years ago
• MeaneyLab / PRSoS
  PRS-on-SPARK
  ☆18Updated 3 years ago
• YeoLab / qtools
  qtools has helper functions to submit jobs to compute clusters (PBS on TSCC, SGE on oolite) from within Python
  ☆21Updated last year
• andrewGhazi / malacoda
  Bayesian analysis of MPRA and other high-throughput genomic assays
  ☆10Updated 4 years ago
• FertigLab / CancerInSilico
  An R package for running cell-based models
  ☆8Updated 5 years ago
• EmanuelGoncalves / crispy
  Python module to analyse CRISPR-based libraries
  ☆11Updated 3 years ago
• AbbVie-ComputationalGenomics / genetic-evidence-approval
  ☆24Updated 4 years ago
• waldronlab / GSEABenchmarkeR
  Reproducible GSEA Benchmarking
  ☆13Updated 3 months ago
• ChristophH / Inferelator
  The official Inferelator repository maintained by current or former Bonneau lab members
  ☆9Updated 7 years ago
• CancerRxGene / gdscIC50
  An R package to fit dose response curves for data from the Genomics of Drug Sensitivity of Cancer (GDSC) project.
  ☆25Updated last year