NCBI-Hackathons / RNA-Seq-in-the-Cloud
An Easy to Use Analysis System for All Human Public bulk RNAseq Data!
☆18Updated 2 years ago
Alternatives and similar repositories for RNA-Seq-in-the-Cloud:
Users that are interested in RNA-Seq-in-the-Cloud are comparing it to the libraries listed below
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- R Interface to the NCBI SRA metadata☆23Updated 6 years ago
- An interactive learning resource for next-generation sequencing (NGS) techniques☆28Updated 6 years ago
- Genomic data interpretation and visualization Workshop☆19Updated last year
- ☆20Updated 2 years ago
- gnomAD browser pre-ASHG 2018☆33Updated 4 years ago
- Opossum is a tool to pre-process RNA-seq reads prior to variant calling.☆28Updated 6 years ago
- Modeling and correcting fragment sequence bias for RNA-seq☆24Updated 10 months ago
- RNA-seq quantifications: gene expression responses to human rhinovirus infection for 6 asthmatic and 6 non-asthmatic donors (SRP046226)☆19Updated 7 years ago
- Modular blocks to build Snakemake workflows for reproducible NGS analyses☆22Updated 5 years ago
- BigWig manpulation tools using libBigWig and htslib☆29Updated 8 months ago
- Identify cell barcodes from single-cell genomics sequencing experiments☆43Updated 3 years ago
- Expectation-Maximization algorithm for Allele-Specific Expression☆21Updated last year
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆29Updated 8 months ago
- Transcript quantification import with automatic metadata detection☆68Updated 2 months ago
- Code and data used to create the JASPAR UCSC Genome Browser tracks data hub☆14Updated 2 years ago
- Intro to workflows for efficient automated data analysis, using snakemake.☆32Updated 6 years ago
- An analysis of Arabidopsis RNA-seq data (hy5 mutant and wt, two replicates each; SRA accession SRX029582)☆16Updated 12 years ago
- Callable Cancer Loci - assessment of sequencing coverage for actionable and pathogenic loci in cancer☆21Updated 4 years ago
- This repository contains course materials from JAX-BD2K workshop.☆31Updated 5 years ago
- interactive plots for differential expression analysis☆32Updated last month
- Demonstrating best practices for bioinformatics command line tools☆26Updated 4 years ago
- A small R package to make sequencing read coverage plots in R.☆37Updated 2 years ago
- materials and website for the 2016 kallisto sleuth workshop☆11Updated 8 years ago
- A hierarchical multiscale model for inferring transcription factor binding from chromatin accessibility data.☆26Updated 8 years ago
- Machine learning use cases for teaching☆13Updated 7 years ago
- Differential ATAC-seq toolkit☆27Updated last year
- Simple web browser to visualize HiC tracks☆18Updated 5 years ago
- ☆13Updated 7 years ago
- deepStats: a stastitical toolbox for deeptools and genomic signals☆34Updated 3 years ago