Alternatives and similar repositories for swiss:

Users that are interested in swiss are comparing it to the libraries listed below

• xqwen / dap
  software package for integrative genetic association analysis
  ☆34Updated last year
• hakyimlab / mixqtl
  Total and allele specific read based cis-QTL, fine-mapping, and prediction
  ☆9Updated 4 years ago
• freeseek / gwaspipeline
  ☆40Updated 7 years ago
• thewonlab / H-MAGMA
  ☆32Updated last year
• ajaynadig / bhr
  Suite of heritability and genetic correlation estimation tools for exome-sequencing data
  ☆33Updated 2 months ago
• zhouhufeng / FAVORannotator
  ☆20Updated 2 years ago
• anastasia-lucas / hudson
  An R package for creating mirrored Manhattan plots
  ☆18Updated 2 years ago
• carlaml / LDpred-funct
  Here we develop the software for the method LDpredfunct described in https://www.biorxiv.org/content/early/2018/07/24/375337
  ☆17Updated 8 months ago
• hakyim / TO-DELETE-PrediXcan
  Code for the in-dev PrediXcan Project
  ☆27Updated 2 years ago
• huwenboshi / s-ldxr
  Stratified squared trans-ethnic genetic correlation
  ☆12Updated 2 years ago
• mcveanlab / TreeWAS
  ☆16Updated 7 years ago
• xqwen / integrative
  Software Pipeline for Integrative Genetic Association Analysis: Probabilistic Assessment of Enrichment and Colocalization
  ☆25Updated 5 years ago
• pgxcentre / region-plot
  A tool to plot significant regions of GWAS
  ☆29Updated 2 years ago
• lcrawlab / BANNs
  Code and simulations using biologically annotated neural networks
  ☆21Updated 3 years ago
• CshlSiepelLab / LINSIGHT
  ☆25Updated 11 months ago
• MRCIEU / gwas-vcf-specification
  Specification for the GWAS-VCF format (manuscript in preparation)
  ☆24Updated 3 years ago
• msesia / knockoffgwas
  A flexible tool for the multi-resolution localization of causal variants across the genome, accounting for population structure.
  ☆14Updated 2 years ago
• weizhou0 / GATE
  ☆22Updated last year
• ilarsf / gwasTools
  Basic and fast GWAS functions for QQ and Manhattan plots (incl. gene names)
  ☆30Updated last year
• diptavo / MultiSKAT
  MultiSKAT is an R-package focused at rare-variant analysis of continuous multiple phenotype data. This project contains the R-codes/funct…
  ☆11Updated 5 years ago
• FINNGEN / saige-pipelines
  ☆16Updated last year
• atgu / hgdp_tgp
  ☆41Updated 7 months ago
• karltayeb / cafeh
  ☆13Updated 2 years ago
• Genentech / midasHLA
  R package enabling statistical association analysis and using immunogenetic data transformation functions for HLA amino acid fine mapping…
  ☆12Updated last year
• Nealelab / picopili
  Fork of ricopili for development of pipeline for family-based data
  ☆17Updated 3 weeks ago
• RajLabMSSM / ggLocusZoom
  Create LocusZoom-style plots in R.
  ☆21Updated 2 years ago
• rivas-lab / public-resources
  Repository for resources we'd like to share with the community.
  ☆24Updated 3 years ago
• bogdanlab / focus
  FOCUS: Fine-mapping Of CaUsal gene Sets
  ☆44Updated last year
• Jmtorres138 / TACTICAL
  Tissue of ACTion scores for Investigating Complex trait-Associated Loci
  ☆13Updated 4 years ago
• Nealelab / UKBB_ldsc_scripts
  Scripts used for generating Neale Lab UKB results
  ☆19Updated 2 years ago