Python version of Factored Spectrally Transformed Linear Mixed Models
☆55Jun 2, 2025Updated last year
Alternatives and similar repositories for FaST-LMM
Users that are interested in FaST-LMM are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A Python library for reading and manipulating genetic data.☆24Nov 2, 2024Updated last year
- PyRice is an API to access some Rice public databases at the same time with consistent output. PyRice design is modular and implements a …☆13Dec 12, 2024Updated last year
- Code for "Gene-Gene Interaction Detection with Deep Learning"☆13Oct 26, 2022Updated 3 years ago
- code to run sei and obtain sei and sequence class predictions☆115Dec 20, 2022Updated 3 years ago
- ☆23Apr 19, 2026Updated 2 months ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Mixed Model Package For Genome-wide association mapping.☆17Mar 31, 2019Updated 7 years ago
- R package for binmap☆12Aug 3, 2023Updated 2 years ago
- A tool to implement Genomic Prediction Experiments using Deep Learning☆17Mar 24, 2023Updated 3 years ago
- Modeling the genomic regulatory codes of fly, mouse, worm, and fish with deep learning☆17Apr 6, 2021Updated 5 years ago
- Linear mixed model for genomic analyses.☆120May 21, 2021Updated 5 years ago
- A pipeline to use Lep-Map3 to create linkage maps and LepAnchor for anchoring and orienting genome assemblies with said linkage maps.☆15Jun 24, 2025Updated last year
- A flexible tool for meta-analysis☆11Jul 31, 2024Updated last year
- Algorithmic framework for measuring feature importance, outlier detection, model applicability evaluation, and ensemble predictive modeli…☆18Aug 21, 2025Updated 10 months ago
- Fast algorithms for GLM-PCA.☆16Mar 12, 2025Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- GPU accelerated GWAS framework based on TensorFlow☆33Jul 6, 2023Updated 2 years ago
- R package for sparse VAR estimation☆13Feb 5, 2026Updated 4 months ago
- R-package: Calculation of haplotype blocks and libraries☆35Jul 22, 2025Updated 11 months ago
- Genome Association Predict Integrate Tools☆236May 21, 2026Updated last month
- Gene network analysis☆20Dec 2, 2022Updated 3 years ago
- GCTA software☆108Jul 9, 2025Updated 11 months ago
- GWAS data analysis experiments☆23Jul 1, 2020Updated 6 years ago
- A collection of commonly used formats for quick lookup.☆14Mar 26, 2026Updated 3 months ago
- regenie is a C++ program for whole genome regression modelling of large genome-wide association studies.☆266Nov 13, 2025Updated 7 months ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Hidden Markov Model (HMM) for Sleep/Wake Identification using Actigraphy☆11Jun 21, 2022Updated 4 years ago
- Upload test☆23Jan 1, 2024Updated 2 years ago
- ukbREST: efficient and streamlined data access for reproducible research of large biobanks☆44Jul 12, 2021Updated 4 years ago
- Library to extract embeddings for DNA sequences using BioFM genomics foundation model☆21Aug 13, 2025Updated 10 months ago
- ☆13Apr 24, 2026Updated 2 months ago
- A python linear mixed model package model for GWAS☆13Apr 8, 2022Updated 4 years ago
- VCF Zarr Specification☆17Jun 4, 2026Updated last month
- ☆15May 31, 2020Updated 6 years ago
- Examples on using EpiGraphDB☆30Mar 22, 2021Updated 5 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆24Dec 10, 2018Updated 7 years ago
- A Python package for creating high-quality manhattan and Q-Q plots from GWAS results.☆52Dec 27, 2023Updated 2 years ago
- Phenotyping algorithms for common biomarkers in primary care EHR for UK Biobank☆33Feb 19, 2021Updated 5 years ago
- ☆23Aug 22, 2019Updated 6 years ago
- An R interface to write OpenCL functions☆11Mar 15, 2022Updated 4 years ago
- A reimplementation of the fastLm function of RcppEigen for big.matrix objects for fast out-of-memory linear model fitting☆13Jul 14, 2017Updated 8 years ago
- R package to compute distribution-free prediction bands using density estimators☆11Jul 26, 2021Updated 4 years ago