Python version of Factored Spectrally Transformed Linear Mixed Models
☆55Jun 2, 2025Updated last year
Alternatives and similar repositories for FaST-LMM
Users that are interested in FaST-LMM are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A Python library for reading and manipulating genetic data.☆24Nov 2, 2024Updated last year
- Code for "Gene-Gene Interaction Detection with Deep Learning"☆13Oct 26, 2022Updated 3 years ago
- PyRice is an API to access some Rice public databases at the same time with consistent output. PyRice design is modular and implements a …☆13Dec 12, 2024Updated last year
- code to run sei and obtain sei and sequence class predictions☆115Dec 20, 2022Updated 3 years ago
- Fast Inference of Networks from Directed Regulations☆23Dec 7, 2023Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆23Apr 19, 2026Updated 3 months ago
- Mixed Model Package For Genome-wide association mapping.☆17Mar 31, 2019Updated 7 years ago
- A pipeline to use Lep-Map3 to create linkage maps and LepAnchor for anchoring and orienting genome assemblies with said linkage maps.☆15Jun 24, 2025Updated last year
- R package for binmap☆12Aug 3, 2023Updated 2 years ago
- Linear mixed model for genomic analyses.☆120May 21, 2021Updated 5 years ago
- A tool to implement Genomic Prediction Experiments using Deep Learning☆17Mar 24, 2023Updated 3 years ago
- Modeling the genomic regulatory codes of fly, mouse, worm, and fish with deep learning☆17Apr 6, 2021Updated 5 years ago
- Hidden Markov Model (HMM) for Sleep/Wake Identification using Actigraphy☆11Jun 21, 2022Updated 4 years ago
- Algorithmic framework for measuring feature importance, outlier detection, model applicability evaluation, and ensemble predictive modeli…☆18Aug 21, 2025Updated 11 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Gene network analysis☆21Dec 2, 2022Updated 3 years ago
- Peak calling for 4C data☆13May 4, 2018Updated 8 years ago
- Code necessary to reproduce experiments in "FloraBERT: cross-species transfer learning with attention-based neural networks for gene expr…☆13Jul 6, 2022Updated 4 years ago
- A flexible tool for meta-analysis☆11Jul 31, 2024Updated last year
- R package for sparse VAR estimation☆13Jul 1, 2026Updated 3 weeks ago
- ☆13Apr 24, 2026Updated 3 months ago
- GPU accelerated GWAS framework based on TensorFlow☆33Jul 6, 2023Updated 3 years ago
- Genome Association Predict Integrate Tools☆237Jul 17, 2026Updated last week
- R-package: Calculation of haplotype blocks and libraries☆36Jul 22, 2025Updated last year
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- GWAS data analysis experiments☆23Jul 1, 2020Updated 6 years ago
- ☆21Feb 26, 2026Updated 4 months ago
- GCTA software☆109Jul 9, 2025Updated last year
- A collection of commonly used formats for quick lookup.☆14Mar 26, 2026Updated 3 months ago
- regenie is a C++ program for whole genome regression modelling of large genome-wide association studies.☆267Nov 13, 2025Updated 8 months ago
- Upload test☆23Jan 1, 2024Updated 2 years ago
- ukbREST: efficient and streamlined data access for reproducible research of large biobanks☆44Jul 12, 2021Updated 5 years ago
- Discovery of biological sequence motifs in R☆28Dec 20, 2018Updated 7 years ago
- A fast, clean, responsive Hugo theme, now for academics.☆10May 20, 2026Updated 2 months ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- A python linear mixed model package model for GWAS☆13Apr 8, 2022Updated 4 years ago
- VCF Zarr Specification☆17Jun 4, 2026Updated last month
- ENCODE whole-genome bisulfite sequencing (WGBS) pipeline☆35Feb 15, 2022Updated 4 years ago
- A Python package for creating high-quality manhattan and Q-Q plots from GWAS results.☆52Dec 27, 2023Updated 2 years ago
- This project extends R with a mechanism for efficient parallel data access by utilizing C++ shared memory. Large data objects can be acc…☆15May 4, 2026Updated 2 months ago
- ☆23Aug 22, 2019Updated 6 years ago
- ☆15May 31, 2020Updated 6 years ago