Alternatives and similar repositories for FaST-LMM:

Users that are interested in FaST-LMM are comparing it to the libraries listed below

• mkanai / fujiplot
  Fuji plot—a circos representation of multiple GWAS results—
  ☆80Updated 11 months ago
• MalteThodberg / awesome-multitrait-gwas
  List of software packages for multi-trait / multiple-trait / multivariate / high-dimensional GWAS
  ☆29Updated 2 months ago
• ShujiaHuang / qmplot
  A Python package for creating high-quality manhattan and Q-Q plots from GWAS results.
  ☆41Updated last year
• monogenea / GWAStutorial
  Genome-wide association studies tutorial 🧬
  ☆48Updated 5 years ago
• limix / limix
  Linear mixed model for genomic analyses.
  ☆104Updated 3 years ago
• eQTL-Catalogue / qtlmap
  Portable eQTL analysis and statistical fine mapping workflow used by the eQTL Catalogue
  ☆46Updated last week
• broadinstitute / pyqtl
  Collection of analysis tools for quantitative trait loci
  ☆48Updated this week
• rivas-lab / public-resources
  Repository for resources we'd like to share with the community.
  ☆24Updated 2 years ago
• broadinstitute / gtex-viz
  GTEx Visualizations
  ☆64Updated 3 years ago
• genepi / nf-gwas
  A nextflow pipeline to perform state-of-the-art genome-wide association studies.
  ☆64Updated last month
• YeoLab / outrigger
  Create a *de novo* alternative splicing database, validate splicing events, and quantify percent spliced-in (Psi) from RNA seq data
  ☆65Updated 4 years ago
• zwdzwd / sesame
  🍪 SEnsible Step-wise Analysis of DNA MEthylation BeadChips
  ☆68Updated 3 weeks ago
• cancer-genomics / delfi_scripts
  ☆72Updated 3 years ago
• qtltools / qtltools
  A complete tool set for molecular QTL discovery and analysis
  ☆51Updated 9 months ago
• czbiohub-sf / cerebra
  A tool for fast and accurate summarizing of variant calling format (VCF) files
  ☆60Updated 2 years ago
• biocore-ntnu / epic2
  Ultraperformant reimplementation of SICER
  ☆56Updated 3 years ago
• 3DGenomes / TADbit
  TADbit is a complete Python library to deal with all steps to analyze, model and explore 3C-based data. With TADbit the user can map FAST…
  ☆100Updated 3 weeks ago
• gagneurlab / OUTRIDER
  OUTRIDER: OUTlier in RNA-seq fInDER is an R-based framework to find aberrantly expressed genes in RNA-seq data
  ☆49Updated last month
• ajaynadig / bhr
  Suite of heritability and genetic correlation estimation tools for exome-sequencing data
  ☆33Updated 2 weeks ago
• FinucaneLab / pops
  ☆71Updated 2 years ago
• eQTL-Catalogue / eQTL-Catalogue-resources
  ☆46Updated 3 months ago
• xinhe-lab / ctwas
  package for the causal TWAS project
  ☆40Updated this week
• crazyhottommy / DNA-methylation-analysis
  DNA methylation analysis notes from Ming Tang
  ☆83Updated 5 years ago
• saigegit / SAIGE
  Development for SAIGE and SAIGE-GENE(+)
  ☆69Updated 3 weeks ago
• neurogenetics / GWAS-pipeline
  This is a general (somewhat comprehensive) description of the LNG GWAS pipeline which can be used to guide researchers on how-to run a GW…
  ☆41Updated 2 years ago
• sirselim / illumina450k_filtering
  A collection of resources to filter 'bad' probes from the Illumina 450k and EPIC methylation arrays
  ☆30Updated last year
• hanchenphd / GMMAT
  Generalized linear Mixed Model Association Tests
  ☆38Updated last year
• leelabsg / SKAT
  Sequence kernel association test (SKAT)
  ☆44Updated last year
• MRCIEU / gwas2vcf
  Convert GWAS summary statistics to VCF
  ☆47Updated last year
• heathsc / gemBS
  gemBS is a bioinformatics pipeline designed for high throughput analysis of DNA methylation from Whole Genome Bisulfite Sequencing data (…
  ☆33Updated 3 years ago