GPU accelerated GWAS framework based on TensorFlow
☆33Jul 6, 2023Updated 2 years ago
Alternatives and similar repositories for GWAS_Flow
Users that are interested in GWAS_Flow are comparing it to the libraries listed below
Sorting:
- VariantStore: A Large-Scale Genomic Variant Search Index☆39Jul 9, 2021Updated 4 years ago
- GEFormer is a genome-wide prediction model for genotype-environment interactions based on a deep learning approach designed to predict ma…☆14Jan 15, 2026Updated last month
- A tool for phasing and imputing haplotypes in 10k+ low coverage sequencing samples☆10Nov 20, 2020Updated 5 years ago
- ☆11Mar 4, 2025Updated 11 months ago
- A scalable variant calling and benchmarking framework supporting both short and long reads.☆14Sep 28, 2025Updated 5 months ago
- Obsolete!! Begin to turn to PrimerServer2☆10Jul 22, 2019Updated 6 years ago
- Genomic Selection using Neural Networks implemented in TensorFlow☆10Aug 22, 2018Updated 7 years ago
- ☆12Feb 19, 2017Updated 9 years ago
- pathoscore evaluates variant pathogenicity tools and scores.☆22Mar 25, 2022Updated 3 years ago
- Genetic correlation calculation pipeline via summary statistics for PheWeb☆13Mar 22, 2019Updated 6 years ago
- ☆13Mar 28, 2021Updated 4 years ago
- Merging paired-end reads and removing adapters☆30Mar 6, 2020Updated 5 years ago
- ☆15Jan 16, 2018Updated 8 years ago
- QUILT: Low coverage whole genome sequence imputation with large reference panels☆66Feb 11, 2026Updated 2 weeks ago
- CoalHMM☆22Nov 4, 2013Updated 12 years ago
- A deeplearning driving bioinformatic toolkit.☆25Jul 14, 2025Updated 7 months ago
- fast easy interval overlapping for nim-lang☆29Jul 9, 2025Updated 7 months ago
- ☆17Jun 14, 2025Updated 8 months ago
- Interactive eQTL visualizations☆14Dec 12, 2022Updated 3 years ago
- AnaLysis routines for ePigenomicS data - 🏫 Bioconductor project☆16Jul 7, 2023Updated 2 years ago
- Polygenic score calculation from VCF in Nim.☆15Nov 22, 2020Updated 5 years ago
- ☆17Jul 7, 2025Updated 7 months ago
- This is a read-only mirror of the CRAN R package repository. rrBLUP — Ridge Regression and Other Kernels for Genomic Selection. Homepag…☆14Dec 11, 2023Updated 2 years ago
- PlantTribes is a collection of automated gene family analysis pipelines for comparative plant genomics☆38Apr 28, 2023Updated 2 years ago
- PySeqArray: data manipulation of whole-genome sequencing variants with SeqArray files in Python (pre-release version)☆14Aug 25, 2017Updated 8 years ago
- DNA kmer operations for nim☆14Apr 24, 2022Updated 3 years ago
- Polyploid micro-haplotype assembly using Markov chain Monte Carlo simulation.☆20Nov 17, 2025Updated 3 months ago
- A fast python class for reading 2-bit files (used by UCSC genome browser)☆14Oct 10, 2025Updated 4 months ago
- Arioc: GPU-accelerated DNA short-read alignment☆70May 20, 2025Updated 9 months ago
- TIDDIT - structural variant calling☆78Dec 8, 2025Updated 2 months ago
- ☆22Jul 7, 2022Updated 3 years ago
- Library to visualize protein sequence features in Typescript using D3. This repository is based on calipho-sib/feature-viewer.☆24Feb 4, 2023Updated 3 years ago
- perSVade: personalized Structural Variation detection☆41Jan 22, 2026Updated last month
- Hera-T, a fast and accurate tool for estimating gene abundances in single cell data generated by the 10X-Chromium protocol☆18Nov 9, 2021Updated 4 years ago
- A pure R implementation of locuszoom for plotting genetic data at genomic loci accompanied by gene annotations.☆53Mar 6, 2025Updated 11 months ago
- ☆18May 19, 2022Updated 3 years ago
- ☆21Sep 22, 2022Updated 3 years ago
- Parallel implementation of the LAST aligner☆18Nov 27, 2016Updated 9 years ago
- A stand-alone application for constructing websites for visualizing and browsing synteny blocks☆18Jan 11, 2021Updated 5 years ago