rec3141 / miniona
realtime krona plots during a minION run
☆9Updated 7 years ago
Related projects ⓘ
Alternatives and complementary repositories for miniona
- ☆26Updated 5 years ago
- Validate and edit small eukaryotic genome assemblies☆31Updated last year
- Nanopore desc☆18Updated 8 years ago
- ☆19Updated 7 years ago
- Wrapper for RTG's vcfeval; DEPRECATED!☆21Updated 8 years ago
- NaS is a hybrid approach developped to take advantage of data generated using MinION device. We combine Illumina and Oxford Nanopore tech…☆15Updated 7 years ago
- Some simple scripts to ease management and local basecalling of millions of FAST5 files☆25Updated 7 years ago
- Falcon2Fastg is a tool for converting a FALCON assembly to FASTG format to visualize with Bandage☆13Updated 8 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆37Updated 4 years ago
- Scaffolding with RNA-seq read alignment☆20Updated 6 years ago
- Error correction and variant calling algorithm for nanopore sequencing☆25Updated 8 years ago
- SAMsift: advanced filtering and tagging of SAM/BAM alignments using Python expressions.☆23Updated 6 years ago
- Annotated Genome Optimization Using Transcriptome Information☆20Updated 4 years ago
- A comprehensive toolkit for running Oxford Nanopore's MinION☆12Updated 6 years ago
- Stitch together Nanopore tiled amplicon data without polishing a reference☆16Updated 9 months ago
- Prioritize structural variants based on CADD scores☆28Updated 4 years ago
- FermiKit small variant calls for public SGDP samples☆17Updated 8 years ago
- Assembly based core genome SNP alignments for bacteria☆25Updated 5 years ago
- ☆29Updated 2 years ago
- Exhaustive capture of biological variation in RNA-seq data through k-mer decomposition.☆15Updated 6 years ago
- Scaffolding with assembly likelihood optimization☆20Updated 3 years ago
- program for haplotype phasing from sequence reads and related tools☆25Updated 5 years ago
- Combine reference and assembled transcriptomes for RNA-Seq analysis☆21Updated 4 years ago
- Mapping-free variant caller for short-read Illumina data☆18Updated 4 years ago
- Read nanopore sequence reads in real-time☆14Updated 7 years ago
- URMAP ultra-fast read mapper☆39Updated 4 years ago
- ☆12Updated 3 years ago
- laSV is a software package that employs local assembly to detect structural variations from whole-genome high-throughput sequencing datas…☆11Updated 8 years ago
- Find Unique genomic Regions☆29Updated this week
- Exact Tandem Repeat Finder (not a TRF replacement)☆46Updated 5 years ago