raphael-group / hotnet2Links
HotNet2 is an algorithm for finding significantly altered subnetworks in a large gene interaction network
☆102Updated 6 years ago
Alternatives and similar repositories for hotnet2
Users that are interested in hotnet2 are comparing it to the libraries listed below
Sorting:
- scLVM is a modelling framework for single-cell RNA-seq data that can be used to dissect the observed heterogeneity into different sources…☆108Updated 2 years ago
- nucleosome calling using ATAC-seq☆108Updated 4 years ago
- Tools for processing UMI RNA-tag data☆131Updated 2 years ago
- ☆62Updated 5 years ago
- ☆84Updated 4 years ago
- MOODS: Motif Occurrence Detection Suite☆106Updated 2 years ago
- R package for analyzing single-cell RNA-seq data☆176Updated last year
- A tool for bigWig files.☆118Updated 7 years ago
- Human transcription factor target genes from 6 databases in convenient R format.☆86Updated 7 years ago
- Course material in notebook format for learning about single cell bioinformatics methods☆99Updated 9 years ago
- Preprocessing of single-cell RNA-Seq (deprecated)☆62Updated 6 years ago
- An archived version of the scater repository, see https://github.com/davismcc/scater for the active version.☆64Updated 8 years ago
- Clustering cells from single cell RNA seq assays☆46Updated 6 years ago
- Deep-learning Augmented RNA-seq analysis of Transcript Splicing☆115Updated last year
- Pipeline for processing inDrops sequencing data☆76Updated 7 years ago
- ☆55Updated 8 months ago
- ISCB DC Area Regional Student Group - Summer 2016 Workshop☆48Updated 9 years ago
- Pipeline for initial analysis of droplet-based single-cell RNA-seq data☆94Updated 3 years ago
- R Codebase for BISCUIT: Infinite Mixture Model to cluster and impute single cells.☆66Updated 7 years ago
- AltAnalyze is a multi-functional and easy-to-use software package for automated single-cell and bulk gene and splicing analyses. Easy-to-…☆105Updated 3 years ago
- ☆85Updated 5 years ago
- An R package for inferring the subclonal architecture of tumors☆122Updated 2 years ago
- Normalization for single cell RNA-seq data☆49Updated 4 months ago
- ☆69Updated 7 years ago
- DEPRECATED. This tool has been superseded by https://github.com/griffithlab/pVACtools☆61Updated 6 years ago
- Code and additional processed data for manuscript "Tumor and Microenvironment Evolution during Immunotherapy with Nivolumab"; see for man…☆52Updated 7 years ago
- Batch effects and the effective design of single-cell gene expression studies☆104Updated 6 years ago
- A tool for the unsupervised clustering of cells from single cell RNA-Seq experiments☆128Updated 4 years ago
- Genetic multiplexing of barcoded single cell RNA-seq☆130Updated last year
- Tools for working with BUS files☆102Updated 5 months ago