rajanil / riboHMM
A mixture of hidden Markov models to infer translated sequences using ribosome footprint profiling
☆7Updated 6 years ago
Alternatives and similar repositories for riboHMM:
Users that are interested in riboHMM are comparing it to the libraries listed below
- optimization of ribosome P-site positioning in ribosome profiling data☆46Updated last year
- PHAST☆71Updated last month
- Ribo-seq TIS Hunter, predicting translation initiation sites and ORFs using riboseq data☆33Updated last month
- ClairS-TO - a deep-learning method for tumor-only somatic variant calling☆58Updated last month
- cDNA read preprocessing☆65Updated 6 months ago
- GenMap - Fast and Exact Computation of Genome Mappability☆104Updated 7 months ago
- Efficient target prediction incorporating accessibility of interaction sites☆46Updated 2 weeks ago
- A python program to call methylation (m6A in DNA) from nanopore signal data☆45Updated 3 years ago
- My collection of light bioinformatics analysis pipelines for specific tasks☆72Updated 8 months ago
- Same species annotation lift over pipeline.☆96Updated last year
- ☆118Updated 2 months ago
- Signal based nanopore RNA demultiplexing with convolutional neural networks☆36Updated 5 months ago
- Integrate DNA-seq and RNA-seq data to identify mutations that are associated with regulatory effects on gene expression.☆124Updated 5 months ago
- Scallop is a reference-based transcriptome assembler for RNA-seq☆89Updated 3 years ago
- Learning the Sequence Alignment/Map format☆111Updated 10 months ago
- Assemblytics is a bioinformatics tool to detect and analyze structural variants from a genome assembly by comparing it to a reference gen…☆140Updated 2 months ago
- Gene Fusion Visualiser☆51Updated 2 years ago
- The Zavolab Automated RNA-seq Pipeline☆35Updated last month
- For biological deep sequencing data. Decompose a UCSC knownGenes/Ensembl GTF file into transcript regions (i.e. exons, introns, UTRs and…☆34Updated last year
- Very simple, pure python, BAM file reader☆79Updated 5 years ago
- Analysis pipelines from Oxford Nanopore Technologies' Research Division☆50Updated 4 years ago
- Scripts to run copynumber variation calls on tumor and normal BAM files using Varscan2☆29Updated 6 years ago
- Fast and flexible ORF finder☆65Updated 3 years ago
- A post sequencing QC tool for Oxford Nanopore sequencers☆92Updated 3 weeks ago
- perSVade: personalized Structural Variation detection☆38Updated 2 months ago
- A simple toolset for BED files (warning: CLI may change before bedtk becomes stable)☆137Updated 8 months ago
- GFF3sort: A Perl Script to sort gff3 files and produce suitable results for tabix tools☆48Updated 4 years ago
- A tool for somatic structural variant calling using long reads☆113Updated last week
- Official repo for the standalone package of Coding Potential Calculator (CPC) 2.☆23Updated 3 years ago
- ☆45Updated 3 weeks ago