BackofenLab / IntaRNA
Efficient target prediction incorporating accessibility of interaction sites
☆48Updated 2 months ago
Alternatives and similar repositories for IntaRNA:
Users that are interested in IntaRNA are comparing it to the libraries listed below
- optimization of ribosome P-site positioning in ribosome profiling data☆52Updated 2 months ago
- Fast and flexible ORF finder☆69Updated 3 years ago
- A pipeline for differential expression and differential alternative splicing analysis☆67Updated last year
- Accurate and rapid RiboRNA sequences Detector based on deep learning☆109Updated last year
- ☆33Updated last month
- gatk4 RNA variant calling pipeline☆47Updated last week
- Tip and tricks for BAM files☆85Updated 6 years ago
- A workflow for enhanced protein isoform detection through integration of long-read RNA-seq and mass spectrometry-based proteomics.☆46Updated 2 years ago
- Galaxy RNA workbench☆40Updated 4 years ago
- Merging paired-end reads and removing adapters☆44Updated last month
- A small-RNA sequencing analysis pipeline☆84Updated last week
- Variant Calling Pipeline Using GATK4 and Nextflow☆54Updated 2 years ago
- The Subread software package is a tool kit for processing next-gen sequencing data. It includes Subread aligner, Subjunc exon-exon juncti…☆44Updated last year
- Ribo-seq TIS Hunter, predicting translation initiation sites and ORFs using riboseq data☆38Updated 5 months ago
- GenMap - Fast and Exact Computation of Genome Mappability☆107Updated 10 months ago
- ☆58Updated 3 years ago
- CADD scripts release for offline scoring. For more information about CADD, please visit our website☆80Updated 5 months ago
- New version of JACUSA -> 2.0☆25Updated this week
- Software for predicting library complexity and genome coverage in high-throughput sequencing.☆82Updated 6 months ago
- Bioinformatics one-liner for 100 days☆47Updated last year
- B-cell and T-cell Adaptive Immune Receptor Repertoire (AIRR) sequencing analysis pipeline using the Immcantation framework☆60Updated last week
- TPMCalculator quantifies mRNA abundance directly from the alignments by parsing BAM files☆130Updated 10 months ago
- An adaptable Snakemake workflow which uses GATKs best practice recommendations to perform germline mutation calling starting with BAM fil…☆11Updated 3 years ago
- Unsorted scripts for bioinformatics☆60Updated 3 years ago
- An R interface to the MEME Suite☆50Updated 7 months ago
- Sequana: a set of Snakemake NGS pipelines☆146Updated 2 months ago
- Nanopore RNA-Seq data from the Singapore Nanopore-Expression Project☆128Updated 3 months ago
- Capturing protein-RNA interaction footprints from single-nucleotide CLIP-seq data☆29Updated 3 years ago
- GFF3sort: A Perl Script to sort gff3 files and produce suitable results for tabix tools☆50Updated 4 years ago
- Analysis pipeline for the GUIDE-seq assay.☆24Updated last week