Efficient target prediction incorporating accessibility of interaction sites
☆51Feb 23, 2026Updated 3 weeks ago
Alternatives and similar repositories for IntaRNA
Users that are interested in IntaRNA are comparing it to the libraries listed below
Sorting:
- A pipeline for structural clustering of RNA secondary structures☆15Apr 21, 2021Updated 4 years ago
- Alignment of RNAs☆25Jul 31, 2024Updated last year
- RNAlien - unsupervised RNA family model construction☆13Jun 8, 2021Updated 4 years ago
- Dockerfiles to build Galaxy images☆24Aug 22, 2023Updated 2 years ago
- The ViennaRNA Package☆389Feb 24, 2026Updated 3 weeks ago
- Library for KEGG pathway enrichment analysis☆19Updated this week
- Experiments for "Scaling read aligners to hundreds of threads on general-purpose processors"☆11Jun 8, 2018Updated 7 years ago
- HiGlass track for displaying arcs between disconnected regions☆10Dec 13, 2022Updated 3 years ago
- Convert .gbk or .embl to .gff (and optionally .fa) (required for QUAST)☆17Jun 19, 2014Updated 11 years ago
- Convert a Genbank flat file to an NCBI ptt file☆17Aug 25, 2023Updated 2 years ago
- Quality assessment of de novo transcriptome assemblies from RNA-Seq data☆26Nov 14, 2025Updated 4 months ago
- DeepLoop robustly identifies enhancer-promoter interactions from low-depth and single-cell Hi-C data☆34Apr 1, 2025Updated 11 months ago
- Classifying RNAs as lncRNAs by ensemble machine learning algorithms☆10Dec 8, 2022Updated 3 years ago
- Graph Grammar Library☆26Jul 7, 2017Updated 8 years ago
- RILseq computational protocol☆11Apr 3, 2022Updated 3 years ago
- miRTrace☆11Jun 14, 2023Updated 2 years ago
- TEMP is a software package for detecting transposable elements (TEs) insertions and excisions from pooled high-throughput sequencing dat…☆22Jul 31, 2017Updated 8 years ago
- Transposable Elements MOvement detection using LOng reads☆25Jul 24, 2025Updated 7 months ago
- A suite for the analysis of CLIP-Seq datasets.☆12Jan 31, 2022Updated 4 years ago
- bioinfo workflow based on snakemake☆14Feb 22, 2024Updated 2 years ago
- The genome annotation service provides automated gene annotation based on the RAST system. This deploys both client and service component…☆11Sep 22, 2020Updated 5 years ago
- a toolset for mining multi-dimensional features of the translatome with ribosome profiling data☆18Jul 19, 2025Updated 8 months ago
- Repository for PFRED GUI codes☆10Feb 25, 2020Updated 6 years ago
- A Generalizable Model for 3D Chromosome Reconstruction Using Graph Convolutional Neural Networks☆18Sep 9, 2021Updated 4 years ago
- A legacy repository. Was replaced by distiller, cooler, and cooltools.☆21Mar 4, 2020Updated 6 years ago
- Scripts and notebooks used in Akgol Oksuz et al. paper☆11Jan 18, 2021Updated 5 years ago
- Legend made easy for matplotlib☆34Jun 7, 2025Updated 9 months ago
- Python package for common tasks in bioinformatic.☆12Sep 24, 2025Updated 5 months ago
- MiCoP is a method for high-accuracy profiling of viral and fungal metagenomic communities.☆15Mar 31, 2022Updated 3 years ago
- A novel bioinformatics pipeline for recent horizontal gene transfer detecting.☆12Nov 13, 2018Updated 7 years ago
- HiCBin: binning metagenomic contigs and recovering metagenome-assembled genomes using Hi-C contact maps☆14May 4, 2023Updated 2 years ago
- Read trimming tool for Illumina NGS data.☆150Mar 10, 2015Updated 11 years ago
- CircSplice☆12Feb 27, 2019Updated 7 years ago
- RNAcode - Detecting protein coding genes in multiple sequence alignment☆25Aug 22, 2024Updated last year
- Pan-3D genome analysis of soybean Hi-C data☆12Mar 6, 2023Updated 3 years ago
- Tools for DLO HiC data analyze☆16Oct 31, 2022Updated 3 years ago
- Transposon Insertion Finder - Detection of new TE insertions in NGS data☆20May 20, 2025Updated 10 months ago
- ☆61Jul 17, 2025Updated 8 months ago
- Coding-Potential Assessment Tool using an alignment-free logistic regression model☆16Feb 29, 2024Updated 2 years ago