Efficient target prediction incorporating accessibility of interaction sites
☆49Sep 18, 2025Updated 5 months ago
Alternatives and similar repositories for IntaRNA
Users that are interested in IntaRNA are comparing it to the libraries listed below
Sorting:
- A pipeline for structural clustering of RNA secondary structures☆15Apr 21, 2021Updated 4 years ago
- Galaxy RNA workbench☆41Oct 10, 2020Updated 5 years ago
- This Is Indian Country - Spring 2018 Instance☆12Apr 30, 2018Updated 7 years ago
- Alignment of RNAs☆25Jul 31, 2024Updated last year
- Dockerfiles to build Galaxy images☆24Aug 22, 2023Updated 2 years ago
- RNAlien - unsupervised RNA family model construction☆13Jun 8, 2021Updated 4 years ago
- Convert a Genbank flat file to an NCBI ptt file☆17Aug 25, 2023Updated 2 years ago
- Library for KEGG pathway enrichment analysis☆18Feb 12, 2026Updated 2 weeks ago
- DeepLoop robustly identifies enhancer-promoter interactions from low-depth and single-cell Hi-C data☆34Apr 1, 2025Updated 10 months ago
- openASO is a project designed to identify regulatory regions of an RNA that can be targeted by antisense oligonucleotides.☆10Sep 30, 2021Updated 4 years ago
- GraphProt: modelling binding preferences of RNA-binding proteins☆20Jul 19, 2018Updated 7 years ago
- A legacy repository. Was replaced by distiller, cooler, and cooltools.☆21Mar 4, 2020Updated 5 years ago
- Transposable Elements MOvement detection using LOng reads☆25Jul 24, 2025Updated 7 months ago
- TEMP is a software package for detecting transposable elements (TEs) insertions and excisions from pooled high-throughput sequencing dat…☆22Jul 31, 2017Updated 8 years ago
- Scripts and notebooks used in Akgol Oksuz et al. paper☆11Jan 18, 2021Updated 5 years ago
- R package to evaluate reproducibility of Hi-C data☆10Mar 16, 2023Updated 2 years ago
- HiGlass track for displaying arcs between disconnected regions☆10Dec 13, 2022Updated 3 years ago
- Experiments for "Scaling read aligners to hundreds of threads on general-purpose processors"☆11Jun 8, 2018Updated 7 years ago
- The genome annotation service provides automated gene annotation based on the RAST system. This deploys both client and service component…☆11Sep 22, 2020Updated 5 years ago
- miRTrace☆11Jun 14, 2023Updated 2 years ago
- A novel bioinformatics pipeline for recent horizontal gene transfer detecting.☆12Nov 13, 2018Updated 7 years ago
- Quality assessment of de novo transcriptome assemblies from RNA-Seq data☆26Nov 14, 2025Updated 3 months ago
- Coding-Potential Assessment Tool using an alignment-free logistic regression model☆15Feb 29, 2024Updated 2 years ago
- CircSplice☆12Feb 27, 2019Updated 7 years ago
- Full-length linear and circular transcript isoform reconstruction and quantification☆11Jun 17, 2024Updated last year
- Python package for common tasks in bioinformatic.☆12Sep 24, 2025Updated 5 months ago
- For computational analysis of bacterial RNA-seq data☆12Jul 14, 2017Updated 8 years ago
- Pan-3D genome analysis of soybean Hi-C data☆12Mar 6, 2023Updated 2 years ago
- bioinfo workflow based on snakemake☆14Feb 22, 2024Updated 2 years ago
- Read trimming tool for Illumina NGS data.☆149Mar 10, 2015Updated 10 years ago
- Legend made easy for matplotlib☆34Jun 7, 2025Updated 8 months ago
- Classifying RNAs as lncRNAs by ensemble machine learning algorithms☆10Dec 8, 2022Updated 3 years ago
- HiCBin: binning metagenomic contigs and recovering metagenome-assembled genomes using Hi-C contact maps☆14May 4, 2023Updated 2 years ago
- Tools for DLO HiC data analyze☆16Oct 31, 2022Updated 3 years ago
- ☆13Sep 4, 2025Updated 5 months ago
- A Generalizable Model for 3D Chromosome Reconstruction Using Graph Convolutional Neural Networks☆18Sep 9, 2021Updated 4 years ago
- A suite for the analysis of CLIP-Seq datasets.☆12Jan 31, 2022Updated 4 years ago
- A repository for neural representational learning of RNA secondary structures☆32Feb 13, 2020Updated 6 years ago
- A tool to identify CLIP-seq peaks☆71Oct 31, 2025Updated 4 months ago