Alternatives and similar repositories for IntaRNA

Users that are interested in IntaRNA are comparing it to the libraries listed below

• LabTranslationalArchitectomics / riboWaltz
  optimization of ribosome P-site positioning in ribosome profiling data
  ☆59Updated 11 months ago
• enasequence / enaBrowserTools
  A collection of scripts to assist in the retrieval of data from the ENA Browser
  ☆93Updated 5 months ago
• hoelzer-lab / rnaflow
  A simple RNA-Seq differential gene expression pipeline using Nextflow
  ☆101Updated 5 months ago
• Zhong-Lab-UCSD / Genomic-Interactive-Visualization-Engine
  Genomic Interactive Visualization Engine
  ☆146Updated 3 years ago
• nf-core / smrnaseq
  A small-RNA sequencing analysis pipeline
  ☆98Updated 3 weeks ago
• wyguo / ThreeDRNAseq
  A pipeline for differential expression and differential alternative splicing analysis
  ☆67Updated last year
• dariober / bioinformatics-cafe
  Unsorted scripts for bioinformatics
  ☆61Updated 4 years ago
• louiejtaylor / grabseqs
  A utility for easy downloading of reads from next-gen sequencing repositories like NCBI SRA
  ☆109Updated 5 months ago
• sheynkman-lab / Long-Read-Proteogenomics
  A workflow for enhanced protein isoform detection through integration of long-read RNA-seq and mass spectrometry-based proteomics.
  ☆50Updated 3 years ago
• kvittingseerup / IsoformSwitchAnalyzeR
  An R package to Identify, Annoatate and Visialize Isoform Switches with Functional Consequences (from RNA-seq data)
  ☆122Updated last month
• hbctraining / Intro-to-rnaseq-hpc-salmon
  ☆50Updated 4 years ago
• sequana / sequana
  Sequana: a set of Snakemake NGS pipelines
  ☆151Updated last week
• ExpressionAnalysis / ea-utils
  Automatically exported from code.google.com/p/ea-utils
  ☆96Updated 2 years ago
• hzi-bifo / RiboDetector
  Accurate and rapid RiboRNA sequences Detector based on deep learning
  ☆118Updated 2 months ago
• jsh58 / NGmerge
  Merging paired-end reads and removing adapters
  ☆46Updated 2 months ago
• aryeelab / guideseq
  Analysis pipeline for the GUIDE-seq assay.
  ☆81Updated 2 years ago
• urmi-21 / orfipy
  Fast and flexible ORF finder
  ☆77Updated 4 years ago
• nf-core / configs
  Config files used to define parameters specific to compute environments at different Institutions
  ☆107Updated this week
• drpowell / degust
  An interactive web-tool for RNA-seq analysis
  ☆70Updated last month
• tderrien / FEELnc
  FEELnc : FlExible Extraction of LncRNA
  ☆93Updated 6 months ago
• mritchielab / long_read_tools
  A catalogue of available long read sequencing data analysis tools
  ☆85Updated 3 weeks ago
• ncbi / TPMCalculator
  TPMCalculator quantifies mRNA abundance directly from the alignments by parsing BAM files
  ☆135Updated last year
• IARCbioinfo / BAM-tricks
  Tip and tricks for BAM files
  ☆86Updated 7 years ago
• gao-lab / CPC2_standalone
  Official repo for the standalone package of Coding Potential Calculator (CPC) 2.
  ☆28Updated 4 years ago
• enormandeau / ncbi_blast_tutorial
  Crash course for NCBI blast tools
  ☆47Updated 6 years ago
• Kingsford-Group / scallop
  Scallop is a reference-based transcriptome assembler for RNA-seq
  ☆92Updated 4 years ago
• smithlabcode / ribotricer
  A tool for accurately detecting actively translating ORFs from Ribo-seq data
  ☆39Updated last year
• dputhier / pygtftk
  A python package and a set of shell commands to handle GTF files
  ☆50Updated last week
• genepi / nf-gwas
  A nextflow pipeline to perform state-of-the-art genome-wide association studies.
  ☆78Updated 3 months ago
• stephenfloor / extract-transcript-regions
  For biological deep sequencing data. Decompose a UCSC knownGenes/Ensembl GTF file into transcript regions (i.e. exons, introns, UTRs and…
  ☆36Updated 2 years ago